Co-expression analysis

Gene ID	TaAffx.12563.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g13250: GATL3 (Galacturonosyltransferase-like 3) (HF=1e-3)
Module size	6 genes
NF	0.63
%ile	88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	1.00	TaAffx.12563.1.A1_at	BJ254471	-	-	1e-3	At1g13250	GATL3 (Galacturonosyltransferase-like 3)	O.I.	H.G.	S.X.	Please select
0.60	81.0	1.00	Ta.3743.1.A1_a_at	BJ254879	-	-	5e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.59	79.8	1.00	Ta.3782.3.A1_x_at	BJ254248	-	-	3e-4	At1g01780	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	1.00	Ta.11772.1.A1_at	BQ170765	-	-	7e+0	At5g60490	FLA12	O.I.	H.G.	S.X.	Please select
0.50	72.4	1.00	Ta.10297.1.A1_at	BJ250042	-	-	2e-2	At4g21445	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	1.00	Ta.3934.1.A1_at	BJ254519	-	-	4e+0	At3g13130	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.9	99.7	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
17.5	99.7	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
16.8	99.6	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
7.5	98.6	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.4	98.2	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.0	98.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.6	97.8	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.9	97.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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