Co-expression analysis

Gene ID	TaAffx.12517.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g34581: hydroxyproline-rich glycoprotein family protein (HF=1e+0)
Module size	20 genes
NF	0.52
%ile	78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	93.6	0.94	TaAffx.12517.1.S1_at	BJ257824	-	-	1e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.95	TaAffx.85817.1.S1_at	CA619362	-	-	4e+0	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.96	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.95	TaAffx.109025.3.S1_at	CA702122	-	-	2e-1	At1g08790	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.95	TaAffx.79437.1.S1_at	CA715704	-	-	3e+0	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.95	TaAffx.35493.1.S1_at	BQ606743	-	-	4e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.95	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.95	TaAffx.58638.1.S1_at	CA617698	-	-	4e+0	At1g12805	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.96	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.96	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.96	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	TaAffx.115939.2.S1_at	CA677586	-	-	7e-2	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	TaAffx.117156.3.S1_at	CA709106	-	-	9e-1	At5g48575	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	TaAffx.132656.2.S1_at	CA600729	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	TaAffx.78861.1.S1_at	CA725589	-	-	1e+1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	TaAffx.73323.1.S1_at	CA713945	-	-	3e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	TaAffx.85343.1.S1_at	CA623566	-	-	4e+0	At5g34828	-	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.30673.1.S1_at	CA623010	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.85941.1.S1_at	CA618291	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	99.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.2	98.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.7	97.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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