Co-expression analysis

Gene ID	TaAffx.1236.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g35370: GDCH (HF=5e+0)
Module size	6 genes
NF	0.05
%ile	14.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.72	TaAffx.1236.1.A1_at	CK209022	-	-	5e+0	At2g35370	GDCH	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.90	Ta.9990.3.S1_x_at	CA733983	-	-	1e-3	At1g22880	CEL5 (CELLULASE 5)	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.92	TaAffx.113092.1.S1_at	CA618163	-	-	1e+0	At5g02550	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.92	TaAffx.99246.2.S1_at	CA657762	-	-	1e+0	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.92	TaAffx.30726.1.S1_at	CA622623	-	-	1e+1	At5g20500	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.92	TaAffx.29653.1.S1_at	CA637989	-	-	1e+1	At5g65230	AtMYB53 (myb domain protein 53)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
34.1	99.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
17.1	99.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
15.4	99.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.0	98.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.7	97.9	GSM138216	genotype H9 developing seed at 5 days after anthesis, biological rep2	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.2	97.5	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM138191	genotype D39 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.7	95.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage