Co-expression analysis

Gene ID TaAffx.12357.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g49400: emb1129 (embryo defective 1129) (HF=2e-2)
Module size 44 genes
NF 0.36
%ile 57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.60.93TaAffx.12357.1.S1_atBJ269842--2e-2At1g49400emb1129 (embryo defective 1129)O.I.H.G.S.X.
0.5173.00.94TaAffx.3708.2.S1_s_atCA606146--2e+1At5g0287060S ribosomal protein L4/L1 (RPL4D)O.I.H.G.S.X.
0.5173.00.95TaAffx.37657.1.A1_atBJ274791--3e-1At3g53310transcriptional factor B3 family proteinO.I.H.G.S.X.
0.4767.90.95Ta.13624.2.S1_x_atCA647589--1e+0At5g27430signal peptidase subunit family proteinO.I.H.G.S.X.
0.4767.90.94TaAffx.128527.1.S1_atCN010324--7e-3At1g45249ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2)O.I.H.G.S.X.
0.4767.90.95Ta.6666.3.S1_x_atCA720211--4e-3At3g03180Got1-like family proteinO.I.H.G.S.X.
0.4565.20.95Ta.7147.3.S1_x_atBJ315882--5e-3At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.4565.20.95Ta.18508.1.S1_a_atCA652261--4e-1At4g37470hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.4464.50.95Ta.13273.2.S1_a_atCA661231--2e-11At1g12760protein binding / ubiquitin-protein ligase/ zinc ion bindingO.I.H.G.S.X.
0.4159.60.95Ta.6760.1.S1_atCA639732--1e-1At2g39700ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)O.I.H.G.S.X.
0.4159.60.95Ta.7147.3.S1_a_atBJ315882--5e-3At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.4058.40.95TaAffx.30725.1.S1_s_atCA622632--1e+0At1g03170unknown proteinO.I.H.G.S.X.
0.4058.40.95Ta.7474.2.S1_a_atCA603080--5e-9At2g39770CYT1 (CYTOKINESIS DEFECTIVE 1)O.I.H.G.S.X.
0.3854.70.95TaAffx.83703.1.S1_s_atCA653500--4e-3At4g31080unknown proteinO.I.H.G.S.X.
0.3854.70.95TaAffx.115727.1.S1_atBJ314247--4e+0At1g68120BPC3 (BASIC PENTACYSTEINE 3)O.I.H.G.S.X.
0.3753.00.94TaAffx.55517.1.S1_atCA665017--3e+1At5g11280unknown proteinO.I.H.G.S.X.
0.3753.00.94Ta.21518.3.S1_a_atCA638607--2e+0At4g36260STY2 (STYLISH 2)O.I.H.G.S.X.
0.3753.00.95Ta.27383.1.S1_atCA605251--5e-4At4g04830methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinO.I.H.G.S.X.
0.3651.90.94TaAffx.53920.1.S1_atBQ901422--1e-4At3g49640FAD binding / catalytic/ tRNA dihydrouridine synthaseO.I.H.G.S.X.
0.3651.90.95Ta.6673.1.A1_a_atBJ319533--2e-9At5g55530C2 domain-containing proteinO.I.H.G.S.X.
0.3549.80.95Ta.11338.3.S1_a_atCA647367--4e+0At3g47200unknown proteinO.I.H.G.S.X.
0.3549.80.95Ta.1862.2.S1_x_atCA690286--1e-12At1g53400unknown proteinO.I.H.G.S.X.
0.3549.80.95Ta.6777.2.A1_a_atCD885593--2e-20At5g51150unknown proteinO.I.H.G.S.X.
0.3549.80.96Ta.7444.2.S1_atBJ315178--8e-1At1g08220-O.I.H.G.S.X.
0.3448.10.96Ta.8525.3.S1_a_atCA743911--7e-1At3g50970LTI30 (LOW TEMPERATURE-INDUCED 30)O.I.H.G.S.X.
0.3448.10.96Ta.9297.1.S1_atBJ321859--2e+0At2g07669unknown proteinO.I.H.G.S.X.
0.3346.90.95Ta.9124.3.S1_a_atCA641207--2e+0At4g21192-O.I.H.G.S.X.
0.3244.40.95Ta.7861.2.S1_a_atCA692192--9e-1At4g19640ARA7O.I.H.G.S.X.
0.3244.40.94Ta.4097.2.S1_s_atBJ258876--2e+0At3g07910-O.I.H.G.S.X.
0.3142.70.94Ta.6666.2.S1_atCA640317--5e-12At3g49420Got1-like family proteinO.I.H.G.S.X.
0.3142.70.95Ta.6439.1.A1_x_atBJ311211--3e+0At5g57150basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3142.70.95Ta.6417.2.S1_atCA610214--2e+1At4g28397-O.I.H.G.S.X.
0.2939.20.95Ta.6082.1.S1_x_atBQ752961--5e-1At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.2939.20.94TaAffx.121133.1.S1_atBQ245545--2e-16At1g54370NHX5O.I.H.G.S.X.
0.2939.20.94Ta.29509.2.S1_x_atCA698053--2e-5At1g63960unknown proteinO.I.H.G.S.X.
0.2839.20.95Ta.9380.2.S1_a_atCA647502--3e-4At4g38220aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putativeO.I.H.G.S.X.
0.2633.60.94TaAffx.121469.1.S1_atCA679506--1e+0At3g50550unknown proteinO.I.H.G.S.X.
0.2633.60.94Ta.10202.1.S1_atCA644112--8e+0At5g66658unknown proteinO.I.H.G.S.X.
0.2633.60.95Ta.8023.1.S1_atCA640979--4e-3At4g30360ATCNGC17O.I.H.G.S.X.
0.2633.60.94TaAffx.103481.1.S1_atCA659288--7e-2At1g79960OFP14 (OVATE FAMILY PROTEIN 14)O.I.H.G.S.X.
0.2532.10.96Ta.13635.2.S1_a_atCA499433--1e-11At1g55270kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.2125.50.96Ta.2361.1.S1_atCK198765--2e-36At3g45180ubiquitin family proteinO.I.H.G.S.X.
0.2125.50.96Ta.9020.2.S1_a_atBQ606451--1e+0At5g03030DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.1821.00.97Ta.7444.1.A1_atBJ320657--4e+0At3g61900auxin-responsive family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.396.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
3.294.8GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.893.6GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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