Co-expression analysis

Gene ID	TaAffx.12357.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g49400: emb1129 (embryo defective 1129) (HF=2e-2)
Module size	44 genes
NF	0.36
%ile	57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.93	TaAffx.12357.1.S1_at	BJ269842	-	-	2e-2	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.94	TaAffx.3708.2.S1_s_at	CA606146	-	-	2e+1	At5g02870	60S ribosomal protein L4/L1 (RPL4D)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.95	TaAffx.37657.1.A1_at	BJ274791	-	-	3e-1	At3g53310	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	Ta.13624.2.S1_x_at	CA647589	-	-	1e+0	At5g27430	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	TaAffx.128527.1.S1_at	CN010324	-	-	7e-3	At1g45249	ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	Ta.6666.3.S1_x_at	CA720211	-	-	4e-3	At3g03180	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.95	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.95	Ta.18508.1.S1_a_at	CA652261	-	-	4e-1	At4g37470	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.13273.2.S1_a_at	CA661231	-	-	2e-11	At1g12760	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	Ta.6760.1.S1_at	CA639732	-	-	1e-1	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.30725.1.S1_s_at	CA622632	-	-	1e+0	At1g03170	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	Ta.7474.2.S1_a_at	CA603080	-	-	5e-9	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.95	TaAffx.83703.1.S1_s_at	CA653500	-	-	4e-3	At4g31080	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.95	TaAffx.115727.1.S1_at	BJ314247	-	-	4e+0	At1g68120	BPC3 (BASIC PENTACYSTEINE 3)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.55517.1.S1_at	CA665017	-	-	3e+1	At5g11280	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	Ta.21518.3.S1_a_at	CA638607	-	-	2e+0	At4g36260	STY2 (STYLISH 2)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	Ta.27383.1.S1_at	CA605251	-	-	5e-4	At4g04830	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.94	TaAffx.53920.1.S1_at	BQ901422	-	-	1e-4	At3g49640	FAD binding / catalytic/ tRNA dihydrouridine synthase	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	Ta.6673.1.A1_a_at	BJ319533	-	-	2e-9	At5g55530	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	Ta.11338.3.S1_a_at	CA647367	-	-	4e+0	At3g47200	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	Ta.1862.2.S1_x_at	CA690286	-	-	1e-12	At1g53400	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	Ta.6777.2.A1_a_at	CD885593	-	-	2e-20	At5g51150	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	Ta.7444.2.S1_at	BJ315178	-	-	8e-1	At1g08220	-	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.8525.3.S1_a_at	CA743911	-	-	7e-1	At3g50970	LTI30 (LOW TEMPERATURE-INDUCED 30)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.9297.1.S1_at	BJ321859	-	-	2e+0	At2g07669	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.9124.3.S1_a_at	CA641207	-	-	2e+0	At4g21192	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	Ta.7861.2.S1_a_at	CA692192	-	-	9e-1	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	Ta.4097.2.S1_s_at	BJ258876	-	-	2e+0	At3g07910	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.94	Ta.6666.2.S1_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.6439.1.A1_x_at	BJ311211	-	-	3e+0	At5g57150	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.6417.2.S1_at	CA610214	-	-	2e+1	At4g28397	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.121133.1.S1_at	BQ245545	-	-	2e-16	At1g54370	NHX5	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	Ta.29509.2.S1_x_at	CA698053	-	-	2e-5	At1g63960	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	Ta.9380.2.S1_a_at	CA647502	-	-	3e-4	At4g38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	TaAffx.121469.1.S1_at	CA679506	-	-	1e+0	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	Ta.10202.1.S1_at	CA644112	-	-	8e+0	At5g66658	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.8023.1.S1_at	CA640979	-	-	4e-3	At4g30360	ATCNGC17	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	TaAffx.103481.1.S1_at	CA659288	-	-	7e-2	At1g79960	OFP14 (OVATE FAMILY PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.13635.2.S1_a_at	CA499433	-	-	1e-11	At1g55270	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.96	Ta.2361.1.S1_at	CK198765	-	-	2e-36	At3g45180	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.96	Ta.9020.2.S1_a_at	BQ606451	-	-	1e+0	At5g03030	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.97	Ta.7444.1.A1_at	BJ320657	-	-	4e+0	At3g61900	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.2	94.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage