Co-expression analysis

Gene ID	TaAffx.122624.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g54190: - (HF=1e-21)
Module size	6 genes
NF	0.17
%ile	30.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.92	TaAffx.122624.2.S1_at	BG909421	-	-	1e-21	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.122624.2.S1_s_at	BG909421	-	-	1e-21	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	TaAffx.23800.1.S1_at	CA730244	-	-	1e+0	At2g26530	AR781	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.94	Ta.9125.3.S1_a_at	BJ317666	-	-	4e+0	At3g02560	40S ribosomal protein S7 (RPS7B)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.94	TaAffx.94517.1.S1_at	BJ243990	-	-	4e-2	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.96	Ta.10722.1.S1_at	BQ166409	-	-	1e-5	At1g61010	CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.7	95.8	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.3	95.0	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.8	93.6	GSM246390	SB62_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
2.8	93.6	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.6	92.9	GSM143498	Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5	92.5	GSM324494	Si+ B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage