Co-expression analysis

Gene ID	TaAffx.120308.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g45530: zinc finger (C3HC4-type RING finger) family protein (HF=1e+0)
Module size	7 genes
NF	0.02
%ile	7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	0.91	TaAffx.120308.1.S1_at	BJ232529	-	-	1e+0	At2g45530	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.110691.1.S1_at	CA655920	-	-	4e+0	At5g37480	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.94	TaAffx.38625.1.S1_at	BJ224452	-	-	6e-2	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.95	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.94	TaAffx.24703.1.S1_at	CA714044	-	-	1e+1	At1g44920	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.94	Ta.3028.1.A1_at	CA501988	-	-	2e-3	At5g05660	ATNFXL2	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.94	Ta.9020.2.S1_a_at	BQ606451	-	-	1e+0	At5g03030	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.2	99.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.4	98.9	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.8	98.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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