Co-expression analysis

Gene ID	TaAffx.120209.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g38210: PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) (HF=3e-1)
Module size	6 genes
NF	0.06
%ile	15.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.75	TaAffx.120209.1.S1_at	BJ236482	-	-	3e-1	At2g38210	PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.94	TaAffx.81513.1.S1_at	CA698826	-	-	2e+1	At4g31740	-	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.95	Ta.10947.1.S1_at	CK152049	-	-	3e+0	At4g08280	-	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.95	TaAffx.113489.3.S1_at	CA692052	-	-	4e+0	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.94	Ta.9462.1.S1_at	CK211936	-	-	2e-5	At1g07230	hydrolase, acting on ester bonds	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.93	Ta.28498.1.S1_at	CK154432	-	-	3e+0	At5g64330	NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
39.4	99.9	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
18.5	99.7	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.2	99.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.8	93.6	GSM138163	genotype E5 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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