Co-expression analysis

Gene ID	TaAffx.119315.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g57240: BG3 (BETA-1,3-GLUCANASE 3) (HF=2e-1)
Module size	45 genes
NF	0.50
%ile	76.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	99.9	0.87	TaAffx.119315.2.S1_at	BJ277428	-	-	2e-1	At3g57240	BG3 (BETA-1,3-GLUCANASE 3)	O.I.	H.G.	S.X.	Please select
0.87	94.2	0.88	TaAffx.119315.2.S1_x_at	BJ277428	-	-	2e-1	At3g57240	BG3 (BETA-1,3-GLUCANASE 3)	O.I.	H.G.	S.X.	Please select
0.74	89.4	0.93	TaAffx.110196.1.S1_s_at	CA698011	-	-	5e+0	At5g29807	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.93	Ta.28.1.S1_at	Y18212.1	glucan endo-1,3-beta-D-glucosidase	-	6e-1	At3g23360	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.93	TaAffx.23165.2.S1_at	CA738710	-	-	1e+0	At2g22160	cysteine endopeptidase-related	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.92	Ta.27762.1.S1_x_at	AF384146.1	thaumatin-like protein	-	2e-1	At1g64185	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.93	TaAffx.15327.1.S1_at	AJ610775	Glucan endo-1,3-beta-D-glucosidase	-	3e+0	At2g22850	AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.94	Ta.30501.1.S1_at	CK205943	-	-	2e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.90	Ta.20121.1.S1_x_at	CA675578	Endo-beta-1,3-glucanase	-	8e+0	At3g61415	ASK21 (ARABIDOPSIS SKP1-LIKE 21)	O.I.	H.G.	S.X.	Please select
0.62	82.3	0.93	Ta.23322.2.S1_at	CA640491	-	-	2e+0	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.62	82.3	0.89	Ta.25845.1.S1_at	CD453621	-	-	1e-2	At3g54270	sucrose-phosphatase 3 (SPP3)	O.I.	H.G.	S.X.	Please select
0.62	82.3	0.92	Ta.3133.1.S1_x_at	CA669705	-	-	6e+0	At5g52030	TraB protein-related	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.89	Ta.9226.1.S1_at	CD915938	Pathogenesis-related protein 4	-	7e+0	At5g45890	SAG12 (SENESCENCE-ASSOCIATED GENE 12)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.90	TaAffx.116570.1.S1_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.91	TaAffx.116570.1.S1_x_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.91	Ta.225.1.S1_at	AF112967.1	-	-	2e-4	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.91	TaAffx.108743.1.S1_at	CA684678	-	-	4e+0	At1g78410	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.92	TaAffx.108556.1.S1_x_at	CA692789	-	-	1e+0	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.88	TaAffx.116570.1.S1_s_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.94	Ta.21354.1.A1_at	CA673898	-	-	3e+0	At2g19360	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.91	TaAffx.81266.1.S1_at	CA687952	-	-	2e+1	Atmg01020	-	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.90	TaAffx.108556.1.S1_at	CA692789	-	-	2e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.92	TaAffx.56014.2.S1_x_at	CA658511	-	-	2e+1	At4g34265	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.93	Ta.21354.1.A1_x_at	CA673898	-	-	3e+0	At2g19360	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.90	TaAffx.80963.1.S1_at	CA690727	-	-	1e+0	At3g01440	oxygen evolving enhancer 3 (PsbQ) family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.92	Ta.22619.1.S1_at	CA687670	-	-	8e+0	At4g32340	-	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.93	TaAffx.108908.2.S1_s_at	CA682574	-	-	4e+0	At3g25400	-	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.93	Ta.26048.1.S1_x_at	CD454944	-	-	3e+1	At5g42100	ATBG_PAP	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.91	TaAffx.82859.1.S1_at	CA698593	-	-	2e+1	At5g53650	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.90	TaAffx.83106.1.S1_at	CA661928	-	-	3e+0	At3g02000	ROXY1	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.92	Ta.11087.2.S1_x_at	CA683929	-	-	5e+0	At2g01667	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.88	Ta.223.1.S1_at	AF112965.1	-	-	3e+0	At2g05790	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.93	Ta.224.1.S1_at	AF112966.1	chitinase IV precursor	-	1e-1	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.91	Ta.30731.1.S1_at	CD876318	-	-	3e-3	At5g12890	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.93	TaAffx.82706.1.S1_at	CA668277	-	-	1e+1	At3g13730	CYP90D1	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.92	Ta.15072.1.A1_at	CK216153	-	-	5e+0	At1g15400	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	Ta.23348.1.A1_x_at	BJ229076	-	-	8e+0	At4g07380	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.92	TaAffx.107979.1.S1_at	CA692409	-	-	3e-1	At2g35420	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.92	TaAffx.110726.1.S1_s_at	CA655231	-	-	1e+0	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.93	Ta.5518.1.S1_at	CA666657	-	-	5e+0	At3g50350	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.89	Ta.30731.3.S1_x_at	CA679736	-	-	2e+1	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.92	TaAffx.21249.1.S1_at	CA706624	-	-	3e+1	At5g07550	GRP19 (GLYCINE-RICH PROTEIN 19)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.91	TaAffx.134015.1.S1_x_at	BQ606320	-	-	5e+0	At1g62333	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.92	TaAffx.110067.1.S1_at	CD884065	-	-	5e+0	At4g02770	PSAD-1 (photosystem I subunit D-1)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.93	Ta.25391.1.S1_at	CD373720	-	-	4e-5	At4g24890	PAP24 (PURPLE ACID PHOSPHATASE 24)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.5	99.4	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
10.2	99.2	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.0	98.8	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.4	98.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.6	97.0	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.4	96.8	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.4	96.8	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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