Co-expression analysis

Gene ID	TaAffx.119266.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g64060: ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) (HF=6e-3)
Module size	6 genes
NF	0.29
%ile	47.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.92	TaAffx.119266.1.S1_at	BJ280207	-	-	6e-3	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.90	TaAffx.73914.1.S1_at	CA656400	-	-	2e-6	At3g04910	WNK1 (WITH NO LYSINE (K) 1)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.91	TaAffx.105851.1.S1_s_at	CA729017	-	-	4e+0	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.92	Ta.7051.2.S1_at	BJ314502	-	-	1e-9	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.92	Ta.11296.2.S1_at	CK210601	-	-	7e-6	At4g26510	ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.91	TaAffx.93901.1.S1_at	CA604755	protein kinase	-	3e-18	At2g20470	kinase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.6	99.8	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
15.5	99.6	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
15.2	99.6	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
9.2	99.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.9	98.4	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
6.7	98.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.3	98.2	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.1	97.5	GSM138145	Genotype RL4452 developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage