Co-expression analysis

Gene ID	TaAffx.119175.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g65040: senescence-associated protein-related (HF=4e+0)
Module size	12 genes
NF	0.58
%ile	84.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.6	0.86	TaAffx.119175.1.A1_s_at	BJ285398	-	-	4e+0	At5g65040	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.91	TaAffx.98159.1.S1_at	BG607574	-	-	9e+0	At5g65670	IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.93	TaAffx.59304.1.A1_at	CA603808	-	-	6e+0	At3g43420	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.94	Ta.8834.1.S1_x_at	CK201003	-	-	2e+0	At1g60240	apical meristem formation protein-related	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.94	Ta.8834.1.S1_a_at	CK201003	-	-	2e+0	At1g60240	apical meristem formation protein-related	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.93	Ta.3605.3.S1_x_at	CA612620	-	-	1e+0	At3g63020	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.89	Ta.25454.1.S1_at	CA638730	-	-	6e-4	At3g58120	BZIP61	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.94	Ta.3605.1.S1_x_at	CK196179	-	-	2e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.91	Ta.14482.1.S1_at	BJ214882	-	-	2e-16	At1g10200	WLIM1	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.93	Ta.30563.1.S1_s_at	CK193839	-	-	5e+0	At1g08790	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	Ta.3605.2.S1_a_at	BU101007	-	-	6e+0	At4g38080	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.91	Ta.18709.1.S1_at	CA641061	-	-	3e-12	At4g03110	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	99.4	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
12.1	99.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
10.1	99.2	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
9.4	99.1	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
6.1	98.1	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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