Co-expression analysis

Gene ID TaAffx.118012.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At3g57920: SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) (HF=2e+0)
Module size 6 genes
NF 0.41
%ile 65.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6383.10.93TaAffx.118012.1.S1_s_atCA695336--2e+0At3g57920SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)O.I.H.G.S.X.
0.4464.50.93Ta.28834.2.S1_x_atBJ211503--9e-1At3g43833unknown proteinO.I.H.G.S.X.
0.3346.90.93Ta.9296.2.S1_a_atAJ251798.1--3e+0At4g13240ROPGEF9O.I.H.G.S.X.
0.3346.90.93TaAffx.109294.1.S1_s_atCA677422--5e+0At5g17730AAA-type ATPase family proteinO.I.H.G.S.X.
0.3346.90.93Ta.6956.2.S1_x_atBJ304062--5e+0At5g36130cytochrome P450 familyO.I.H.G.S.X.
0.2532.10.94Ta.21374.3.S1_x_atCA620163--5e-4At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.999.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
4.396.7GSM111185genotype C22 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
4.296.6GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.595.4GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM111236genotype F38b developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM298087Crown tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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