Co-expression analysis

Gene ID	TaAffx.118012.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g57920: SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) (HF=2e+0)
Module size	6 genes
NF	0.41
%ile	65.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.93	TaAffx.118012.1.S1_s_at	CA695336	-	-	2e+0	At3g57920	SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.93	Ta.28834.2.S1_x_at	BJ211503	-	-	9e-1	At3g43833	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	Ta.9296.2.S1_a_at	AJ251798.1	-	-	3e+0	At4g13240	ROPGEF9	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	TaAffx.109294.1.S1_s_at	CA677422	-	-	5e+0	At5g17730	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	Ta.6956.2.S1_x_at	BJ304062	-	-	5e+0	At5g36130	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.94	Ta.21374.3.S1_x_at	CA620163	-	-	5e-4	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
39.9	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.3	96.7	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.2	96.6	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1	94.5	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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