Co-expression analysis

Gene ID	TaAffx.11755.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g44340: VQ motif-containing protein (HF=3e-1)
Module size	18 genes
NF	0.26
%ile	42.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	0.92	TaAffx.11755.1.S1_at	BJ283635	-	-	3e-1	At2g44340	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	Ta.3878.1.S1_at	BJ243696	-	-	1e+0	At4g10925	F-box family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.10181.3.S1_a_at	CA648012	-	-	2e-5	At2g22125	binding	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.28561.1.S1_at	CK197498	-	-	2e-22	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.94	Ta.11241.1.A1_at	BQ169685	-	-	1e+0	At3g03840	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	Ta.7290.1.S1_x_at	CA722757	-	-	7e-1	At3g23610	dual specificity protein phosphatase (DsPTP1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.25563.1.S1_at	CD454106	-	-	3e-12	At3g46830	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.94	Ta.8094.2.S1_at	BQ171910	-	-	1e-2	At1g09390	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.12561.1.S1_at	CK196288	-	-	3e-2	At1g13380	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.5672.1.S1_at	BJ253821	-	-	1e-3	At3g25500	AFH1 (FORMIN HOMOLOGY 1)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.98	Ta.27649.1.S1_at	AB158407.1	CesA protein	-	2e-80	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.5672.1.S1_s_at	BJ253821	-	-	1e-3	At3g25500	AFH1 (FORMIN HOMOLOGY 1)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.97	Ta.22899.1.S1_at	CK212881	-	-	4e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.94	Ta.22098.1.A1_at	BJ220663	-	-	1e+0	At5g62460	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.94	Ta.10230.2.S1_a_at	BJ313540	-	-	4e+0	At4g11385	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.95	TaAffx.95237.1.S1_at	BE430275	-	-	3e-13	At1g76890	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	Ta.12499.2.A1_at	BJ311691	-	-	4e-31	At1g31420	FEI1 (FEI 1)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.94	Ta.25390.2.S1_x_at	CD452988	-	-	2e+0	At1g09390	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.7	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
7.1	98.5	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
6.7	98.4	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.0	94.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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