Co-expression analysis

Gene ID	TaAffx.117121.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g38530: ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1) (HF=6e-2)
Module size	43 genes
NF	0.23
%ile	38.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.1	0.90	TaAffx.117121.1.S1_at	CA692520	-	-	6e-2	At4g38530	ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.93	Ta.25139.1.S1_at	CA615602	-	-	7e+0	At5g17150	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	Ta.9642.2.S1_a_at	CA662794	-	-	4e+0	At4g16360	AMP-activated protein kinase	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	TaAffx.128616.1.S1_x_at	CD924685	-	-	1e-1	At3g16700	fumarylacetoacetate hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.92	TaAffx.119724.1.S1_at	CA687829	-	-	4e+0	At5g57370	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	TaAffx.30725.1.S1_s_at	CA622632	-	-	1e+0	At1g03170	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.28281.3.S1_a_at	BJ316702	-	-	4e+0	At4g17615	CBL1 (CALCINEURIN B-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.18508.1.S1_a_at	CA652261	-	-	4e-1	At4g37470	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.13308.2.S1_a_at	CA646875	-	-	8e-11	At3g29090	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.13624.2.S1_x_at	CA647589	-	-	1e+0	At5g27430	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	TaAffx.75287.1.A1_at	BQ169236	-	-	5e+0	At1g64370	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	Ta.13475.1.A1_at	CK214077	-	-	7e+0	At5g65120	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.93	Ta.18286.1.S1_x_at	CD454639	-	-	1e+0	At1g35435	-	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.93	Ta.11338.3.S1_x_at	CA647367	-	-	4e+0	At3g47200	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	Ta.13273.2.S1_a_at	CA661231	-	-	2e-11	At1g12760	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	Ta.6666.3.S1_x_at	CA720211	-	-	4e-3	At3g03180	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.6932.2.S1_s_at	CD492027	-	-	2e-17	At4g30810	scpl29 (serine carboxypeptidase-like 29)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.25854.1.S1_at	CD453706	-	-	5e-15	At1g05940	CAT9 (CATIONIC AMINO ACID TRANSPORTER 9)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.92	Ta.24363.2.S1_x_at	CA611887	-	-	4e+0	At4g22950	AGL19 (AGAMOUS-LIKE 19)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.94	TaAffx.12686.1.S1_at	CA648409	-	-	3e-7	At1g23030	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	Ta.22534.1.S1_a_at	CA644825	-	-	6e-3	At1g50740	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	Ta.16958.2.S1_at	CA602134	-	-	5e-9	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.93	Ta.21413.2.S1_a_at	CA611852	-	-	6e+0	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.94	TaAffx.14945.1.S1_at	CA648644	-	-	5e-7	At1g10040	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.95	Ta.11730.1.S1_at	CA736324	-	-	1e+0	At1g75470	ATPUP15	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	Ta.11338.1.S1_at	BQ169872	-	-	3e+0	At4g08593	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	TaAffx.108126.1.S1_at	CK161244	-	-	6e-1	At3g22450	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	Ta.3420.3.S1_at	CA647953	-	-	1e+0	At1g01170	ozone-responsive stress-related protein, putative	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.94	Ta.8309.3.S1_at	CA605094	-	-	4e+0	At2g22121	LCR35 (Low-molecular-weight cysteine-rich 35)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.93	Ta.23101.1.S1_at	BQ802059	-	-	1e+1	At4g12400	stress-inducible protein, putative	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.95	Ta.6439.1.A1_x_at	BJ311211	-	-	3e+0	At5g57150	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.93	TaAffx.2187.1.S1_at	CK211192	-	-	4e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.93	Ta.14705.2.S1_a_at	CK206029	-	-	5e-1	At1g29870	tRNA synthetase class II (G, H, P and S) family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.93	Ta.28208.1.A1_x_at	BJ299269	-	-	7e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.95	Ta.3585.1.S1_at	CA606475	-	-	1e-1	At5g17150	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.95	Ta.7011.2.S1_a_at	CA636224	-	-	1e-9	At2g22310	ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	Ta.9486.1.S1_a_at	CA613597	-	-	4e-13	At2g18750	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.95	Ta.13635.2.S1_a_at	CA499433	-	-	1e-11	At1g55270	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.95	Ta.4276.3.S1_a_at	CA609673	-	-	1e-3	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.96	Ta.13722.1.S1_at	BJ239650	-	-	6e-13	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.95	Ta.22534.2.S1_at	CA697218	-	-	6e-3	At1g50740	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.94	Ta.23691.1.A1_at	CD881270	-	-	8e-6	At3g46600	scarecrow transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.93	Ta.11254.2.S1_at	CA638530	-	-	1e+0	At5g13450	ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	99.3	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.8	98.7	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.3	95.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.1	90.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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