Co-expression analysis

Gene ID	TaAffx.117057.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At4g39960: DNAJ heat shock family protein (HF=3e-9)
Module size	6 genes
NF	0.68
%ile	91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.98	TaAffx.117057.1.S1_s_at	CA719086	-	-	3e-9	At4g39960	DNAJ heat shock family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	TaAffx.97533.4.S1_at	CA667394	-	-	6e-5	At2g28800	ALB3 (ALBINO 3)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	TaAffx.97533.4.S1_x_at	CA667394	-	-	6e-5	At2g28800	ALB3 (ALBINO 3)	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.98	Ta.28015.1.S1_at	BE496816	-	-	2e-7	At5g11450	oxygen-evolving complex-related	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.98	Ta.27727.1.S1_at	CA618225	-	-	6e-1	At5g18520	-	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.98	TaAffx.65878.1.S1_s_at	BJ225204	-	-	1e+1	At4g22666	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	99.5	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
10.8	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.9	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.5	99.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.7	98.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.0	98.5	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig4763_at, orthologous to the query gene, TaAffx.117057.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	Contig4763_at	At4g39960	-	-	3e-7	At4g39960	DNAJ heat shock family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig6465_at	At4g39960	-	-	2e-11	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig9785_at	At4g39960	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig5234_at	At4g39960	-	-	5e-11	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig4737_s_at	At4g39960	-	-	3e-29	At2g35040	AICARFT/IMPCHase bienzyme family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig17213_at	At4g39960	-	-	1e+0	At2g44110	MLO15 (MILDEW RESISTANCE LOCUS O 15)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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