Co-expression analysis

Gene ID TaAffx.11641.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g00830: RNA recognition motif (RRM)-containing protein (HF=3e-6)
Module size 31 genes
NF 0.44
%ile 69.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.60.92TaAffx.11641.1.S1_atCK207516--3e-6At4g00830RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5979.80.93TaAffx.113092.1.S1_atCA618163--1e+0At5g02550unknown proteinO.I.H.G.S.X.
0.5576.80.93TaAffx.105503.1.S1_atCA733364--1e+0At5g44200CBP20 (CAP-BINDING PROTEIN 20)O.I.H.G.S.X.
0.5475.50.94TaAffx.114049.1.S1_atCA599641--5e+0At4g33560unknown proteinO.I.H.G.S.X.
0.5374.90.95TaAffx.109175.2.S1_x_atCA679138--1e+0At4g29020glycine-rich proteinO.I.H.G.S.X.
0.5374.90.95TaAffx.115939.2.S1_atCA677586--7e-2At1g30800-O.I.H.G.S.X.
0.5374.90.93TaAffx.117368.1.S1_atBQ605885--2e+1At5g02780In2-1 protein, putativeO.I.H.G.S.X.
0.5072.40.95Ta.18019.2.S1_atCA625748--1e+0At1g32700zinc-binding family proteinO.I.H.G.S.X.
0.4969.70.94TaAffx.112465.1.S1_s_atCA623726--3e-13At4g00360CYP86A2 (CYTOCHROME P450 86 A2)O.I.H.G.S.X.
0.4869.00.95TaAffx.112158.1.S1_atCA626538--2e+1At3g28590unknown proteinO.I.H.G.S.X.
0.4869.00.94TaAffx.110167.1.S1_atCA662870--4e+0At4g14440HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)O.I.H.G.S.X.
0.4767.90.95Ta.3911.2.S1_s_atCA604151--4e+0At2g44290protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)O.I.H.G.S.X.
0.4767.90.95TaAffx.90026.1.S1_atBQ609544--3e-1At3g20830protein kinase family proteinO.I.H.G.S.X.
0.4666.80.94TaAffx.16699.2.S1_x_atCA682179--4e+0At5g36130cytochrome P450 familyO.I.H.G.S.X.
0.4666.80.93TaAffx.29371.1.S1_atCA644147--4e+0At5g18310unknown proteinO.I.H.G.S.X.
0.4666.80.95TaAffx.85941.1.S1_atCA618291--2e+1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4666.80.96TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.
0.4362.20.94TaAffx.23743.1.S1_atCA731059--3e-1At2g28790osmotin-like protein, putativeO.I.H.G.S.X.
0.4260.90.95TaAffx.5596.1.S1_atCA705635--3e+0At1g12250thylakoid lumenal protein-relatedO.I.H.G.S.X.
0.3956.10.94TaAffx.57555.1.S1_atCA618738--2e+1At5g67600unknown proteinO.I.H.G.S.X.
0.3956.10.94TaAffx.35248.1.S1_atCA731653--1e+0At3g20620F-box family protein-relatedO.I.H.G.S.X.
0.3854.70.94TaAffx.87085.1.S1_x_atCA596042--1e+0At1g12250thylakoid lumenal protein-relatedO.I.H.G.S.X.
0.3854.70.95TaAffx.55653.1.S1_atCA663094--1e+1At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3651.90.95TaAffx.73323.1.S1_atCA713945--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.3549.80.95TaAffx.78861.1.S1_atCA725589--1e+1At3g28070nodulin MtN21 family proteinO.I.H.G.S.X.
0.3448.10.94TaAffx.82721.1.S1_atCA668034--3e+1At4g20780calcium-binding protein, putativeO.I.H.G.S.X.
0.3142.70.94TaAffx.50210.1.S1_atCA744417--7e-2At1g60880AGL56O.I.H.G.S.X.
0.3040.90.94TaAffx.57312.1.S1_atCA632121--7e-2At5g37550unknown proteinO.I.H.G.S.X.
0.2939.20.95TaAffx.31313.1.S1_atCA617546--1e+1At3g52561unknown proteinO.I.H.G.S.X.
0.2839.20.95Ta.3203.2.S1_x_atCA621738--5e-6At1g27530-O.I.H.G.S.X.
0.2633.60.94TaAffx.64591.1.S1_atBJ288225--1e+0At1g19010unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.299.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
9.799.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.998.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.398.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.198.1GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
5.998.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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