Co-expression analysis

Gene ID	TaAffx.116069.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g38000: Dof-type zinc finger domain-containing protein (HF=3e-7)
Module size	6 genes
NF	0.05
%ile	14.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.90	TaAffx.116069.1.S1_at	CA702374	-	-	3e-7	At4g38000	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.95	TaAffx.24443.1.S1_at	CA719291	-	-	9e-1	At1g64710	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.95	Ta.6161.3.S1_a_at	CA640525	-	-	1e-12	At5g50870	UBC27 (ubiquitin-conjugating enzyme 27)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.95	TaAffx.117665.1.S1_at	CA708244	-	-	4e+0	At1g77200	AP2 domain-containing transcription factor TINY, putative	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.95	TaAffx.143995.3.S1_s_at	AY491968	-	-	4e-33	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.95	Ta.9077.1.S1_x_at	CK167537	-	-	3e-19	At1g77670	aminotransferase class I and II family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
45.2	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
14.0	99.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.8	98.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage