Co-expression analysis

Gene ID	TaAffx.115792.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g02870: VTC4 (HF=2e-1)
Module size	14 genes
NF	0.42
%ile	67.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	0.94	TaAffx.115792.1.S1_at	CA615969	-	-	2e-1	At3g02870	VTC4	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.96	Ta.10164.1.S1_x_at	BJ234909	-	-	3e-1	At3g57440	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.96	Ta.13292.1.S1_s_at	CD373872	-	-	2e-2	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.97	Ta.4811.1.S1_x_at	BJ229035	-	-	1e-2	At1g28590	lipase, putative	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.20658.1.S1_x_at	BQ236450	-	-	4e-1	At3g06130	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.14029.1.S1_at	BQ804699	-	-	3e+0	At3g01230	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.10164.2.S1_a_at	CA601625	-	-	2e+1	At5g12190	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.20658.1.S1_a_at	BQ236450	-	-	4e-1	At3g06130	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.95	Ta.22087.1.S1_at	CD454477	-	-	3e+0	At3g17950	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.2870.2.S1_at	BJ284170	-	-	3e-31	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.22430.1.S1_at	CA745538	-	-	2e+0	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.29445.1.S1_at	CK212497	-	-	3e+0	At3g48660	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	TaAffx.3910.2.A1_x_at	BJ284892	-	-	1e-1	At3g57440	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.97	Ta.21020.1.S1_at	CD895774	-	-	3e+0	At3g57710	protein kinase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	99.2	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
9.3	99.0	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
7.9	98.7	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.0	89.7	GSM138199	genotype C22 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.0	89.7	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.0	89.7	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
1.9	88.9	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
1.8	88.1	GSM138195	genotype J15 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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