Co-expression analysis

Gene ID	TaAffx.115280.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g03480: CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase) (HF=8e-3)
Module size	23 genes
NF	0.22
%ile	37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	93.8	0.77	TaAffx.115280.1.S1_at	CA659397	-	-	8e-3	At3g03480	CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.86	TaAffx.28280.1.S1_at	CA662344	-	-	3e-1	At1g65620	AS2 (ASYMMETRIC LEAVES 2)	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.85	Ta.13546.1.A1_at	BQ162396	-	-	3e+0	At4g27920	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.83	TaAffx.7500.1.S1_at	CA657749	-	-	2e-1	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.90	Ta.15123.1.A1_at	CA690581	-	-	4e+0	At2g02147	LCR73 (Low-molecular-weight cysteine-rich 73)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.86	Ta.21340.1.S1_a_at	CA683606	-	-	6e-1	At3g50651	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.92	Ta.14483.1.S1_x_at	CA652948	-	-	3e-2	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.93	Ta.27506.1.S1_at	AY428038.1	ammonium transporter AMT2.1	-	3e-3	At2g38290	ATAMT2 (AMMONIUM TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.91	Ta.5331.1.A1_x_at	BJ280996	-	-	3e+0	At2g29860	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.93	Ta.28479.1.S1_at	BJ286275	-	-	9e-6	At5g40780	LHT1	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	Ta.12517.2.S1_a_at	CA681881	-	-	2e-2	At1g50310	STP9 (SUGAR TRANSPORTER 9)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.89	Ta.5331.1.A1_a_at	BJ280996	-	-	3e+0	At2g29860	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.91	Ta.21340.1.S1_at	CA683606	-	-	6e-1	At3g50651	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.86	TaAffx.78909.1.S1_at	BJ288732	-	-	4e-10	At2g38300	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.90	TaAffx.28804.1.S1_at	CA655997	-	-	4e+0	At4g16750	DRE-binding transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.84	TaAffx.27063.1.S1_at	CA681704	-	-	7e-1	At1g70770	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.93	Ta.29307.1.A1_s_at	CK163859	-	-	1e+0	At4g26730	methyltransferase	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.92	TaAffx.109477.1.S1_at	CA674221	-	-	2e-1	At5g67640	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.91	TaAffx.130064.3.S1_s_at	CA680862	-	-	3e-4	At2g38940	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.83	Ta.12464.1.S1_at	CA684599	-	-	2e+1	Atmg00280	-	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.91	Ta.12339.1.S1_s_at	BT009250.1	-	-	5e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.90	TaAffx.19109.1.A1_at	CK216126	-	-	9e+0	At4g12970	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.90	Ta.29307.1.A1_at	CK163859	-	-	1e+0	At4g26730	methyltransferase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	96.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.4	95.2	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2	94.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.6	92.9	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage