Co-expression analysis

Gene ID TaAffx.113916.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g36280: adenylosuccinate lyase, putative / adenylosuccinase, putative (HF=7e-5)
Module size 6 genes
NF 0.41
%ile 65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5576.80.95TaAffx.113916.1.S1_atCA601471--7e-5At1g36280adenylosuccinate lyase, putative / adenylosuccinase, putativeO.I.H.G.S.X.
0.5979.80.95TaAffx.115985.2.S1_s_atBQ606839--6e-2At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.
0.5374.90.96Ta.1178.2.S1_atBG909050--1e-1At2g07775unknown proteinO.I.H.G.S.X.
0.5072.40.96Ta.2127.3.S1_a_atCA731487--6e-33At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.4362.20.96TaAffx.118169.1.S1_atBJ292465--1e-10At2g35720DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2024.00.95Ta.3075.2.S1_x_atCA601469--4e-14At3g04600tRNA synthetase class I (W and Y) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.896.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM298084Crown tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.695.6GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM298083Crown tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM298086Crown tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.094.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.094.3GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.4467.1.S1_at, orthologous to the query gene, TaAffx.113916.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.6Zm.4467.1.S1_atAt1g36280hypothetical protein LOC100217081-1e-5At1g36280adenylosuccinate lyase, putative / adenylosuccinase, putativeO.I.H.G.S.X.
0.6279.8Zm.537.1.A1_a_atAt1g36280hypothetical protein LOC100194026 /// hypothetical protein LOC100273405-1e-55At4g02930elongation factor Tu, putative / EF-Tu, putativeO.I.H.G.S.X.
0.5469.8Zm.2859.1.A1_a_atAt1g36280alcohol dehydrogenase2-2e-11At1g77120ADH1 (ALCOHOL DEHYDROGENASE 1)O.I.H.G.S.X.
0.5267.3Zm.4077.2.A1_a_atAt1g36280rho GDP-dissociation inhibitor 1-1e-9At1g62450Rho GDP-dissociation inhibitor family proteinO.I.H.G.S.X.
0.5065.7Zm.1957.1.A1_atAt1g36280COP9 signalosome complex subunit 8-3e-1At5g37070unknown proteinO.I.H.G.S.X.
0.4759.9Zm.6437.2.A1_atAt1g36280pre-mRNA-splicing factor ATP-dependent RNA helicase-8e-1At2g32820-O.I.H.G.S.X.
0.4455.7Zm.12716.1.A1_atAt1g36280--4e-1At3g43583unknown proteinO.I.H.G.S.X.
0.4352.8Zm.5927.2.S1_atAt1g36280Hypothetical protein LOC100194338-1e-38At2g44350ATCSO.I.H.G.S.X.
0.4352.8Zm.477.2.A1_atAt1g36280hypothetical protein LOC100274928-2e-75At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)O.I.H.G.S.X.
0.4149.7Zm.7016.2.A1_x_atAt1g36280--5e+0At1g54500rubredoxin family proteinO.I.H.G.S.X.
0.3844.2Zm.1633.1.S1_atAt1g36280fiber protein Fb34-5e-7At1g13380unknown proteinO.I.H.G.S.X.
0.3844.2Zm.2681.1.A1_atAt1g36280--5e+0At5g42990UBC18 (ubiquitin-conjugating enzyme 18)O.I.H.G.S.X.
0.3742.3Zm.4524.1.A1_atAt1g36280--1e+1At4g00420double-stranded RNA-binding domain (DsRBD)-containing proteinO.I.H.G.S.X.
0.3742.3Zm.5016.1.A1_atAt1g36280--2e-19At2g04030CR88O.I.H.G.S.X.
0.3641.3Zm.14825.1.S1_atAt1g36280m25 protein-5e-1At4g09960STK (SEEDSTICK)O.I.H.G.S.X.
0.3641.3Zm.5810.1.A1_atAt1g36280pop3 peptide-5e-4At3g17210HS1 (HEAT STABLE PROTEIN 1)O.I.H.G.S.X.
0.3538.9Zm.13103.1.S1_atAt1g36280hypothetical protein LOC100191205-2e-4At5g49710unknown proteinO.I.H.G.S.X.
0.3538.9Zm.3136.1.A1_atAt1g36280hypothetical protein LOC100192461-9e-66At4g13930SHM4 (serine hydroxymethyltransferase 4)O.I.H.G.S.X.
0.3336.0Zm.17097.1.A1_atAt1g36280--5e+0At4g16610zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3233.4Zm.6848.3.S1_atAt1g36280--5e-12At1g09640elongation factor 1B-gamma, putative / eEF-1B gamma, putativeO.I.H.G.S.X.
0.3233.4Zm.694.1.A1_a_atAt1g36280hypothetical protein LOC100275466-1e+0At4g31260unknown proteinO.I.H.G.S.X.
0.2724.6Zm.3837.1.S1_atAt1g36280epoxide hydrolase 2-5e-2At2g26750epoxide hydrolase, putativeO.I.H.G.S.X.
0.2724.6Zm.4355.1.A1_atAt1g36280seed maturation protein-2e+0At5g10140FLC (FLOWERING LOCUS C)O.I.H.G.S.X.
0.2724.6Zm.6931.1.S1_a_atAt1g36280hypothetical LOC542168-2e-4At2g36310URH1 (URIDINE-RIBOHYDROLASE 1)O.I.H.G.S.X.
0.2622.7Zm.13806.1.S1_atAt1g36280gda-1-5e-33At3g27090-O.I.H.G.S.X.
0.2622.7Zm.3098.1.A1_atAt1g36280caffeoyl-CoA O-methyltransferase 1-7e-10At4g34050caffeoyl-CoA 3-O-methyltransferase, putativeO.I.H.G.S.X.
0.2318.6Zm.5566.1.A1_a_atAt1g36280hypothetical protein LOC100193873 /// mitochondrial ATP synthase-5e-1At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.2216.9Zm.6513.3.A1_atAt1g36280--1e-18At2g35240plastid developmental protein DAG, putativeO.I.H.G.S.X.
0.2216.9Zm.15183.1.A1_atAt1g36280--1e+0At2g25770unknown proteinO.I.H.G.S.X.
0.2014.2Zm.4719.1.A1_atAt1g36280hypothetical protein LOC100278138-1e+0At4g22810DNA-binding protein-relatedO.I.H.G.S.X.
0.2014.2Zm.6850.1.S1_atAt1g36280--2e+0At3g01170structural constituent of ribosomeO.I.H.G.S.X.
0.2014.2Zm.4664.3.S1_x_atAt1g36280--4e+0At5g65070MAF4 (MADS AFFECTING FLOWERING 4)O.I.H.G.S.X.
0.1912.8Zm.2957.1.A1_atAt1g36280--5e-12At1g34370STOP1 (sensitive to proton rhizotoxicity 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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