Co-expression analysis

Gene ID TaAffx.113916.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g36280: adenylosuccinate lyase, putative / adenylosuccinase, putative (HF=7e-5)
Module size 6 genes
NF 0.41
%ile 65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5576.80.95TaAffx.113916.1.S1_atCA601471--7e-5At1g36280adenylosuccinate lyase, putative / adenylosuccinase, putativeO.I.H.G.S.X.
0.5979.80.95TaAffx.115985.2.S1_s_atBQ606839--6e-2At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.
0.5374.90.96Ta.1178.2.S1_atBG909050--1e-1At2g07775unknown proteinO.I.H.G.S.X.
0.5072.40.96Ta.2127.3.S1_a_atCA731487--6e-33At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.4362.20.96TaAffx.118169.1.S1_atBJ292465--1e-10At2g35720DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2024.00.95Ta.3075.2.S1_x_atCA601469--4e-14At3g04600tRNA synthetase class I (W and Y) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.896.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM298084Crown tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.695.6GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM298083Crown tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM298086Crown tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.094.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.094.3GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0313600, orthologous to the query gene, TaAffx.113916.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7793.1Os03g0313600At1g36280-Adenylosuccinate-AMP lyase (EC 4.3.2.2)2e-14At1g36280adenylosuccinate lyase, putative / adenylosuccinase, putativeO.I.H.G.S.X.
0.6181.2Os10g0321700At1g36280-Glycine-rich RNA-binding protein PsGRBP1e+0At1g53935unknown proteinO.I.H.G.S.X.
0.5068.0Os08g0191200At1g36280-Phosphoribosylamine--glycine ligase (EC 6.3.4.13)(GARS) (Glycinamide ribonucleotide synthetase)(Phosphoribosylglycinamide synthetase)8e-8At1g09830phosphoribosylamine--glycine ligase (PUR2)O.I.H.G.S.X.
0.4051.1Os03g0639700At1g36280-RecA protein (Recombinase A)1e-48At1g79050DNA repair protein recAO.I.H.G.S.X.
0.105.7Os09g0112400At1g36280-DCL protein, chloroplast precursor (Defectivechloroplasts and leaves protein)2e-2At3g46630-O.I.H.G.S.X.
0.052.5Os02g0638000At1g36280-Conserved hypothetical protein3e+0At3g51500unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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