Co-expression analysis

Gene ID TaAffx.113916.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g36280: adenylosuccinate lyase, putative / adenylosuccinase, putative (HF=7e-5)
Module size 6 genes
NF 0.41
%ile 65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5576.80.95TaAffx.113916.1.S1_atCA601471--7e-5At1g36280adenylosuccinate lyase, putative / adenylosuccinase, putativeO.I.H.G.S.X.
0.5979.80.95TaAffx.115985.2.S1_s_atBQ606839--6e-2At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.
0.5374.90.96Ta.1178.2.S1_atBG909050--1e-1At2g07775unknown proteinO.I.H.G.S.X.
0.5072.40.96Ta.2127.3.S1_a_atCA731487--6e-33At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.4362.20.96TaAffx.118169.1.S1_atBJ292465--1e-10At2g35720DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2024.00.95Ta.3075.2.S1_x_atCA601469--4e-14At3g04600tRNA synthetase class I (W and Y) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.896.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM298084Crown tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.695.6GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM298083Crown tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM298086Crown tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.094.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.094.3GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig12090_at, orthologous to the query gene, TaAffx.113916.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.2Contig12090_atAt1g36280--2e-7At1g36280adenylosuccinate lyase, putative / adenylosuccinase, putativeO.I.H.G.S.X.
0.5674.3Contig11204_atAt1g36280--4e-22At1g72040deoxynucleoside kinase familyO.I.H.G.S.X.
0.5167.5Contig12762_atAt1g36280--2e-16At2g35920helicase domain-containing proteinO.I.H.G.S.X.
0.4661.0Contig18647_atAt1g36280--2e-3At5g05310unknown proteinO.I.H.G.S.X.
0.4255.2Contig8360_atAt1g36280--2e-23At4g00370ANTR2O.I.H.G.S.X.
0.3849.5Contig13958_atAt1g36280--2e+0At3g29370unknown proteinO.I.H.G.S.X.
0.3747.9Contig4662_atAt1g36280--1e-16At1g61700DNA-directed RNA polymerase II, putative (RPB10)O.I.H.G.S.X.
0.3647.1Contig12505_atAt1g36280--3e+0At3g52720ACA1 (ALPHA CARBONIC ANHYDRASE 1)O.I.H.G.S.X.
0.3647.1Contig13419_atAt1g36280--3e+0At3g58670unknown proteinO.I.H.G.S.X.
0.3443.6Contig12907_atAt1g36280--3e-19At1g80030DNAJ heat shock protein, putativeO.I.H.G.S.X.
0.3342.6Contig6680_atAt1g36280--2e-1At2g23560MES7 (METHYL ESTERASE 7)O.I.H.G.S.X.
0.3342.6Contig5342_atAt1g36280--4e-3At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)O.I.H.G.S.X.
0.3240.3Contig6253_atAt1g36280--3e-19At5g26030FC1 (ferrochelatase 1)O.I.H.G.S.X.
0.3138.6HVSMEb0014L17f_atAt1g36280--2e+0At4g09800RPS18C (S18 RIBOSOMAL PROTEIN)O.I.H.G.S.X.
0.3138.6Contig9955_atAt1g36280--3e-1At2g23310ATRER1C1O.I.H.G.S.X.
0.3138.6Contig4592_s_atAt1g36280--3e-22At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.3138.6HV05M01u_x_atAt1g36280--8e+0At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.3138.6Contig8498_atAt1g36280--6e-8At4g36390radical SAM domain-containing protein / TRAM domain-containing proteinO.I.H.G.S.X.
0.3037.0Contig3963_s_atAt1g36280--7e-39At4g19210ATRLI2O.I.H.G.S.X.
0.3037.0rbasd15a18_s_atAt1g36280--8e-2At5g64230unknown proteinO.I.H.G.S.X.
0.3037.0Contig11817_atAt1g36280--3e-2At5g45590unknown proteinO.I.H.G.S.X.
0.2935.5Contig2946_atAt1g36280--5e-5At5g03630ATMDAR2O.I.H.G.S.X.
0.2935.5Contig6844_atAt1g36280--9e-3At3g17160unknown proteinO.I.H.G.S.X.
0.2835.5Contig7474_atAt1g36280--6e+0At5g40650SDH2-2O.I.H.G.S.X.
0.2835.5Contig6533_atAt1g36280--5e-6At2g46790APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9)O.I.H.G.S.X.
0.2835.5Contig8511_atAt1g36280--5e+0At5g44850-O.I.H.G.S.X.
0.2732.1Contig11633_atAt1g36280--6e-1At3g53650histone H2B, putativeO.I.H.G.S.X.
0.2630.4Contig9087_atAt1g36280--7e-2At5g66370unknown proteinO.I.H.G.S.X.
0.2630.4Contig6642_atAt1g36280--3e-77At5g46290KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)O.I.H.G.S.X.
0.2528.9Contig3354_s_atAt1g36280--2e-5At2g47400CP12-1O.I.H.G.S.X.
0.2326.1Contig7246_atAt1g36280--1e-10At5g14260SET domain-containing proteinO.I.H.G.S.X.
0.2224.2Contig6698_atAt1g36280--9e-19At1g20330SMT2 (STEROL METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.2122.6Contig16599_atAt1g36280--3e-1At4g29710phosphodiesterase/nucleotide pyrophosphatase-relatedO.I.H.G.S.X.
0.2122.6Contig4494_s_atAt1g36280--5e+0At5g55508unknown proteinO.I.H.G.S.X.
0.1919.6Contig12544_atAt1g36280--2e+1At5g03100F-box family proteinO.I.H.G.S.X.
0.1716.9rbags14j23_s_atAt1g36280--6e-1At3g53668CPuORF51 (Conserved peptide upstream open reading frame 51)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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