CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.113604.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g65490: unknown protein (HF=3e-1)

Module size 45 genes

NF 0.35

%ile 56.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.6 0.79 TaAffx.113604.1.S1_at CA608738 - - 3e-1 At1g65490 unknown protein O.I. H.G. S.X.
0.69 86.9 0.80 Ta.8852.1.A1_at BQ162511 - - 1e+1 At5g47830 unknown protein O.I. H.G. S.X.
0.69 86.9 0.85 Ta.19162.1.S1_at CA648099 - - 1e+0 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.60 81.0 0.85 Ta.8788.2.S1_at CA651691 - - 4e-1 At2g43280 far-red impaired responsive family protein / FAR1 family protein O.I. H.G. S.X.
0.60 81.0 0.85 Ta.18787.1.S1_at CA642169 - - 2e-1 At1g10470 ARR4 (RESPONSE REGULATOR 4) O.I. H.G. S.X.
0.54 75.5 0.84 Ta.19622.1.S1_at CA654295 - - 1e-5 At1g66470 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.51 73.0 0.91 TaAffx.32029.1.S1_at CA602639 - - 4e+0 At2g03640 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.51 73.0 0.86 Ta.989.2.S1_x_at CA697991 - - 4e+0 At3g55600 - O.I. H.G. S.X.
0.50 72.4 0.87 Ta.14333.1.A1_at BU100649 - - 5e+0 At5g06890 - O.I. H.G. S.X.
0.49 69.7 0.93 Ta.14132.1.S1_x_at BQ803864 - - 5e-3 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) O.I. H.G. S.X.
0.48 69.0 0.86 TaAffx.29564.1.S1_at CA639950 - - 4e+0 At4g21260 unknown protein O.I. H.G. S.X.
0.47 67.9 0.85 Ta.26186.1.A1_at CD452604 - - 2e+0 Atmg01350 - O.I. H.G. S.X.
0.47 67.9 0.92 Ta.14132.2.S1_x_at CK211101 - - 3e-2 At4g27270 quinone reductase family protein O.I. H.G. S.X.
0.46 66.8 0.90 Ta.26109.1.S1_at CD452700 - - 5e-1 At2g32790 ubiquitin-conjugating enzyme, putative O.I. H.G. S.X.
0.46 66.8 0.85 TaAffx.56735.1.S1_at CA645491 - - 4e+0 At5g05370 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative O.I. H.G. S.X.
0.45 65.2 0.90 Ta.18888.1.S1_at CA643510 - - 3e+0 At3g54040 photoassimilate-responsive protein-related O.I. H.G. S.X.
0.43 62.2 0.91 Ta.13168.3.S1_x_at CA604430 - - 2e+1 At5g48920 TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7) O.I. H.G. S.X.
0.43 62.2 0.90 Ta.25838.1.A1_at CD453571 - - 2e+1 At5g23160 unknown protein O.I. H.G. S.X.
0.42 60.9 0.88 TaAffx.98109.1.S1_at CA593344 - - 7e-2 At1g53490 DNA binding O.I. H.G. S.X.
0.42 60.9 0.85 TaAffx.51582.1.S1_x_at CA723376 - - 2e-1 At5g53970 aminotransferase, putative O.I. H.G. S.X.
0.42 60.9 0.87 Ta.18965.2.S1_at CA608704 - - 7e-2 At1g22480 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.39 56.1 0.87 Ta.8896.2.S1_x_at CA639810 - - 1e-1 At1g15970 methyladenine glycosylase family protein O.I. H.G. S.X.
0.39 56.1 0.85 Ta.26128.1.A1_at CD452868 - - 2e+0 At2g03350 unknown protein O.I. H.G. S.X.
0.38 54.7 0.85 TaAffx.79037.1.S1_at CA723500 - - 1e+1 At3g61415 ASK21 (ARABIDOPSIS SKP1-LIKE 21) O.I. H.G. S.X.
0.37 53.0 0.91 Ta.30773.1.S1_at AY543531.1 expansin EXPA5 - 7e-4 At2g40610 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) O.I. H.G. S.X.
0.37 53.0 0.90 Ta.8828.2.S1_x_at CA607227 - - 4e+0 At3g52770 ZPR3 (LITTLE ZIPPER 3) O.I. H.G. S.X.
0.35 49.8 0.83 Ta.14132.3.S1_x_at CA606089 - - 4e-3 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) O.I. H.G. S.X.
0.34 48.1 0.87 TaAffx.29137.1.S1_at CA649648 - - 4e-3 At1g08750 GPI-anchor transamidase, putative O.I. H.G. S.X.
0.32 44.4 0.94 Ta.18283.2.S1_x_at CA607852 - - 2e+1 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.31 42.7 0.91 Ta.26178.1.A1_at CD453855 - - 6e+0 At5g65274 - O.I. H.G. S.X.
0.30 40.9 0.83 Ta.26188.1.A1_at CD452630 - - 6e-1 At3g02720 DJ-1 family protein / protease-related O.I. H.G. S.X.
0.29 39.2 0.89 Ta.19488.1.S1_at CA652517 - - 1e+1 At2g32765 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) O.I. H.G. S.X.
0.28 39.2 0.92 Ta.16592.1.S1_at CA609230 - - 4e+0 At1g09660 KH domain-containing quaking protein, putative O.I. H.G. S.X.
0.27 35.6 0.91 TaAffx.29465.1.S1_at CA642260 - - 5e+0 At5g55856 - O.I. H.G. S.X.
0.25 32.1 0.94 Ta.9396.1.S1_a_at CA606310 - - 5e-1 At5g57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) O.I. H.G. S.X.
0.25 32.1 0.93 Ta.1795.1.A1_at BE445285 - - 7e-2 At3g30180 BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2) O.I. H.G. S.X.
0.23 29.0 0.93 TaAffx.113829.1.S1_at CA604276 - - 2e+0 At5g26848 unknown protein O.I. H.G. S.X.
0.21 25.5 0.91 Ta.18546.1.S1_x_at CA638585 - - 1e+1 At5g11750 ribosomal protein L19 family protein O.I. H.G. S.X.
0.20 24.0 0.93 Ta.18965.3.S1_x_at CA638958 - - 7e-1 At5g62627 - O.I. H.G. S.X.
0.19 22.4 0.87 TaAffx.119291.1.S1_at BJ278845 - - 3e-4 At4g33660 unknown protein O.I. H.G. S.X.
0.18 21.0 0.93 TaAffx.31973.1.S1_at CA604179 - - 4e+0 At1g12423 unknown protein O.I. H.G. S.X.
0.18 21.0 0.90 Ta.8974.1.A1_at BQ162712 - - 3e+0 At4g23870 unknown protein O.I. H.G. S.X.
0.17 19.8 0.91 Ta.19579.1.S1_at CA653631 - - 9e+0 At4g15620 integral membrane family protein O.I. H.G. S.X.
0.17 19.8 0.88 TaAffx.124202.2.S1_at BJ283298 - - 2e-2 At2g28660 copper-binding family protein O.I. H.G. S.X.
0.16 18.2 0.83 TaAffx.8213.1.S1_at CA631501 - - 8e-1 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.6	0.79	TaAffx.113604.1.S1_at	CA608738	-	-	3e-1	At1g65490	unknown protein	O.I.	H.G.	S.X.
0.69	86.9	0.80	Ta.8852.1.A1_at	BQ162511	-	-	1e+1	At5g47830	unknown protein	O.I.	H.G.	S.X.
0.69	86.9	0.85	Ta.19162.1.S1_at	CA648099	-	-	1e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.
0.60	81.0	0.85	Ta.8788.2.S1_at	CA651691	-	-	4e-1	At2g43280	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.
0.60	81.0	0.85	Ta.18787.1.S1_at	CA642169	-	-	2e-1	At1g10470	ARR4 (RESPONSE REGULATOR 4)	O.I.	H.G.	S.X.
0.54	75.5	0.84	Ta.19622.1.S1_at	CA654295	-	-	1e-5	At1g66470	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.51	73.0	0.91	TaAffx.32029.1.S1_at	CA602639	-	-	4e+0	At2g03640	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.51	73.0	0.86	Ta.989.2.S1_x_at	CA697991	-	-	4e+0	At3g55600	-	O.I.	H.G.	S.X.
0.50	72.4	0.87	Ta.14333.1.A1_at	BU100649	-	-	5e+0	At5g06890	-	O.I.	H.G.	S.X.
0.49	69.7	0.93	Ta.14132.1.S1_x_at	BQ803864	-	-	5e-3	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.
0.48	69.0	0.86	TaAffx.29564.1.S1_at	CA639950	-	-	4e+0	At4g21260	unknown protein	O.I.	H.G.	S.X.
0.47	67.9	0.85	Ta.26186.1.A1_at	CD452604	-	-	2e+0	Atmg01350	-	O.I.	H.G.	S.X.
0.47	67.9	0.92	Ta.14132.2.S1_x_at	CK211101	-	-	3e-2	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.
0.46	66.8	0.90	Ta.26109.1.S1_at	CD452700	-	-	5e-1	At2g32790	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.
0.46	66.8	0.85	TaAffx.56735.1.S1_at	CA645491	-	-	4e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.
0.45	65.2	0.90	Ta.18888.1.S1_at	CA643510	-	-	3e+0	At3g54040	photoassimilate-responsive protein-related	O.I.	H.G.	S.X.
0.43	62.2	0.91	Ta.13168.3.S1_x_at	CA604430	-	-	2e+1	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.
0.43	62.2	0.90	Ta.25838.1.A1_at	CD453571	-	-	2e+1	At5g23160	unknown protein	O.I.	H.G.	S.X.
0.42	60.9	0.88	TaAffx.98109.1.S1_at	CA593344	-	-	7e-2	At1g53490	DNA binding	O.I.	H.G.	S.X.
0.42	60.9	0.85	TaAffx.51582.1.S1_x_at	CA723376	-	-	2e-1	At5g53970	aminotransferase, putative	O.I.	H.G.	S.X.
0.42	60.9	0.87	Ta.18965.2.S1_at	CA608704	-	-	7e-2	At1g22480	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.
0.39	56.1	0.87	Ta.8896.2.S1_x_at	CA639810	-	-	1e-1	At1g15970	methyladenine glycosylase family protein	O.I.	H.G.	S.X.
0.39	56.1	0.85	Ta.26128.1.A1_at	CD452868	-	-	2e+0	At2g03350	unknown protein	O.I.	H.G.	S.X.
0.38	54.7	0.85	TaAffx.79037.1.S1_at	CA723500	-	-	1e+1	At3g61415	ASK21 (ARABIDOPSIS SKP1-LIKE 21)	O.I.	H.G.	S.X.
0.37	53.0	0.91	Ta.30773.1.S1_at	AY543531.1	expansin EXPA5	-	7e-4	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	O.I.	H.G.	S.X.
0.37	53.0	0.90	Ta.8828.2.S1_x_at	CA607227	-	-	4e+0	At3g52770	ZPR3 (LITTLE ZIPPER 3)	O.I.	H.G.	S.X.
0.35	49.8	0.83	Ta.14132.3.S1_x_at	CA606089	-	-	4e-3	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.
0.34	48.1	0.87	TaAffx.29137.1.S1_at	CA649648	-	-	4e-3	At1g08750	GPI-anchor transamidase, putative	O.I.	H.G.	S.X.
0.32	44.4	0.94	Ta.18283.2.S1_x_at	CA607852	-	-	2e+1	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.31	42.7	0.91	Ta.26178.1.A1_at	CD453855	-	-	6e+0	At5g65274	-	O.I.	H.G.	S.X.
0.30	40.9	0.83	Ta.26188.1.A1_at	CD452630	-	-	6e-1	At3g02720	DJ-1 family protein / protease-related	O.I.	H.G.	S.X.
0.29	39.2	0.89	Ta.19488.1.S1_at	CA652517	-	-	1e+1	At2g32765	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	O.I.	H.G.	S.X.
0.28	39.2	0.92	Ta.16592.1.S1_at	CA609230	-	-	4e+0	At1g09660	KH domain-containing quaking protein, putative	O.I.	H.G.	S.X.
0.27	35.6	0.91	TaAffx.29465.1.S1_at	CA642260	-	-	5e+0	At5g55856	-	O.I.	H.G.	S.X.
0.25	32.1	0.94	Ta.9396.1.S1_a_at	CA606310	-	-	5e-1	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	O.I.	H.G.	S.X.
0.25	32.1	0.93	Ta.1795.1.A1_at	BE445285	-	-	7e-2	At3g30180	BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)	O.I.	H.G.	S.X.
0.23	29.0	0.93	TaAffx.113829.1.S1_at	CA604276	-	-	2e+0	At5g26848	unknown protein	O.I.	H.G.	S.X.
0.21	25.5	0.91	Ta.18546.1.S1_x_at	CA638585	-	-	1e+1	At5g11750	ribosomal protein L19 family protein	O.I.	H.G.	S.X.
0.20	24.0	0.93	Ta.18965.3.S1_x_at	CA638958	-	-	7e-1	At5g62627	-	O.I.	H.G.	S.X.
0.19	22.4	0.87	TaAffx.119291.1.S1_at	BJ278845	-	-	3e-4	At4g33660	unknown protein	O.I.	H.G.	S.X.
0.18	21.0	0.93	TaAffx.31973.1.S1_at	CA604179	-	-	4e+0	At1g12423	unknown protein	O.I.	H.G.	S.X.
0.18	21.0	0.90	Ta.8974.1.A1_at	BQ162712	-	-	3e+0	At4g23870	unknown protein	O.I.	H.G.	S.X.
0.17	19.8	0.91	Ta.19579.1.S1_at	CA653631	-	-	9e+0	At4g15620	integral membrane family protein	O.I.	H.G.	S.X.
0.17	19.8	0.88	TaAffx.124202.2.S1_at	BJ283298	-	-	2e-2	At2g28660	copper-binding family protein	O.I.	H.G.	S.X.
0.16	18.2	0.83	TaAffx.8213.1.S1_at	CA631501	-	-	8e-1	At1g68530	KCS6 (3-KETOACYL-COA SYNTHASE 6)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.4 99.6 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
16.1 99.6 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
15.8 99.6 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
15.7 99.6 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
14.2 99.5 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
14.1 99.5 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
5.6 97.8 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
5.6 97.8 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0 97.4 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM314278 tissue type: anthers, before anthesis - rep1 GSE12508 Transcription patterns during wheat development

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
17.4	99.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
16.1	99.6	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
15.8	99.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
15.7	99.6	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
14.2	99.5	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
14.1	99.5	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.6	97.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	TaAffx.113604.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g65490: unknown protein (HF=3e-1)
Module size	45 genes
NF	0.35
%ile	56.1

Co-expression analysis

Gene ID TaAffx.113604.1.S1_at Gene name Homology with ArabidopsisSimilar to At1g65490: unknown protein (HF=3e-1) Module size 45 genes NF 0.35 %ile 56.1

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID TaAffx.113604.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g65490: unknown protein (HF=3e-1)

Module size 45 genes

NF 0.35

%ile 56.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays