Co-expression analysis

Gene ID TaAffx.112812.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g22450: COX6B (CYTOCHROME C OXIDASE 6B) (HF=3e+0)
Module size 16 genes
NF 0.24
%ile 39.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.87TaAffx.112812.1.S1_atCA620452--3e+0At1g22450COX6B (CYTOCHROME C OXIDASE 6B)O.I.H.G.S.X.
0.4260.90.92TaAffx.59111.1.S1_atCA607597--1e+0At2g31305INH3 (INHIBITOR-3)O.I.H.G.S.X.
0.3142.70.94Ta.8956.1.A1_atBQ162686--3e+0At3g31350unknown proteinO.I.H.G.S.X.
0.3040.90.95Ta.3501.3.A1_atCA658638--3e-1At5g08330TCP family transcription factor, putativeO.I.H.G.S.X.
0.2839.20.94TaAffx.7846.1.S1_atCA647264--2e+1At5g15670F-box family proteinO.I.H.G.S.X.
0.2633.60.94TaAffx.83097.1.S1_atCA662094--7e-2At1g75950SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)O.I.H.G.S.X.
0.2532.10.94TaAffx.65565.2.S1_atBJ232957--3e-1At3g04370PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)O.I.H.G.S.X.
0.2430.30.95TaAffx.105451.1.S1_atCA734135--1e+0At3g06730thioredoxin family proteinO.I.H.G.S.X.
0.2329.00.94Ta.26670.1.A1_atCD491523--9e-20At4g26850VTC2 (vitamin c defective 2)O.I.H.G.S.X.
0.2329.00.94Ta.24929.2.S1_atCA662680--9e-1At5g16990NADP-dependent oxidoreductase, putativeO.I.H.G.S.X.
0.2227.10.94Ta.26673.1.A1_atCD491535--1e-9At2g32950COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)O.I.H.G.S.X.
0.2125.50.93TaAffx.111590.1.S1_atCA637180--1e+0At1g01990-O.I.H.G.S.X.
0.1922.40.95TaAffx.107511.1.S1_atCA632217--2e+1At5g57980RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)O.I.H.G.S.X.
0.1922.40.92TaAffx.50865.1.S1_atCA734499--3e-1At3g05250zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1112.40.95Ta.3911.2.S1_s_atCA604151--4e+0At2g44290protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)O.I.H.G.S.X.
0.1011.30.95TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.2GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
8.098.8GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
7.198.5GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.798.4GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.298.1GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.998.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.197.5GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.897.2GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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