Co-expression analysis

Gene ID TaAffx.112617.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g22370: QQT1 (QUATRE-QUART 1) (HF=2e-13)
Module size 8 genes
NF 0.34
%ile 54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4666.80.97TaAffx.112617.1.S1_atCA727349--2e-13At5g22370QQT1 (QUATRE-QUART 1)O.I.H.G.S.X.
0.4058.40.98TaAffx.63045.1.S1_atCA643793translation initiation factor nCBP-2e-15At5g18110NCBP (NOVEL CAP-BINDING PROTEIN)O.I.H.G.S.X.
0.3854.70.98Ta.6511.1.S1_atBQ168749--1e-19At1g03330small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putativeO.I.H.G.S.X.
0.3854.70.98Ta.3303.1.S1_atBJ309564--7e-13At4g31300PBA1O.I.H.G.S.X.
0.3549.80.98TaAffx.2372.2.S1_s_atBJ253908--7e-2At4g12790ATP-binding family proteinO.I.H.G.S.X.
0.3346.90.98Ta.20977.1.S1_atCA595141--8e-9At3g09890ankyrin repeat family proteinO.I.H.G.S.X.
0.2633.60.98TaAffx.130141.1.S1_atBQ166980--7e+0At4g14746-O.I.H.G.S.X.
0.1618.20.98Ta.14466.1.S1_atCD454130--6e-3At3g49100signal recognition particle 9 kDa protein, putative / SRP9, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.398.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.797.9GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.497.7GSM324494Si+ B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
4.496.8GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM246387SB169_Stem_ rep2_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stemLink to GEO
4.296.6GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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