Co-expression analysis

Gene ID	TaAffx.112443.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g48930: EMB1080 (embryo defective 1080) (HF=4e-28)
Module size	6 genes
NF	0.08
%ile	19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.85	TaAffx.112443.2.S1_at	CA627380	-	-	4e-28	At3g48930	EMB1080 (embryo defective 1080)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.97	Ta.5573.1.S1_at	CK161875	-	-	2e+0	At3g04990	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	TaAffx.59779.1.S1_x_at	CA595426	-	-	2e-5	At5g41970	-	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.96	Ta.13412.1.S1_at	CK207048	-	-	4e-2	At5g15750	RNA-binding S4 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.96	Ta.13687.1.S1_at	CD454805	-	-	9e-3	At5g26110	ATP binding / catalytic/ protein kinase	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.96	Ta.7569.1.S1_at	BJ308274	-	-	2e-17	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.7	99.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
8.4	98.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.0	97.4	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5	96.9	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9	96.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM246389	SB10_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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