Co-expression analysis

Gene ID	TaAffx.112158.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g28590: unknown protein (HF=2e+1)
Module size	6 genes
NF	0.59
%ile	85.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.95	TaAffx.112158.1.S1_x_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	TaAffx.78861.1.S1_at	CA725589	-	-	1e+1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.96	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
10.9	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.50667.1.A1_at, orthologous to the query gene, TaAffx.112158.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	PtpAffx.50667.1.A1_at	At3g28590	-	-	1e+1	At5g62200	embryo-specific protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.210347.1.S1_at	At3g28590	hypothetical protein	-	1e-8	At4g27680	MSP1 protein, putative / intramitochondrial sorting protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.221618.1.S1_at	At3g28590	hypothetical protein	-	8e-1	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.224111.1.S1_at	At3g28590	hypothetical protein	-	2e+0	At5g38050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.5397.1.A1_at	At3g28590	hypothetical protein	-	1e+0	At5g15320	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.3432.1.S1_at	At3g28590	-	-	1e+0	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage