CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.112158.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g28590: unknown protein (HF=2e+1)

Module size 6 genes

NF 0.59

%ile 85.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.96 TaAffx.112158.1.S1_at CA626538 - - 2e+1 At3g28590 unknown protein O.I. H.G. S.X.
0.67 86.3 0.96 TaAffx.50210.1.S1_at CA744417 - - 7e-2 At1g60880 AGL56 O.I. H.G. S.X.
0.60 81.0 0.95 TaAffx.112158.1.S1_x_at CA626538 - - 2e+1 At3g28590 unknown protein O.I. H.G. S.X.
0.44 64.5 0.96 TaAffx.78861.1.S1_at CA725589 - - 1e+1 At3g28070 nodulin MtN21 family protein O.I. H.G. S.X.
0.43 62.2 0.96 TaAffx.55653.1.S1_at CA663094 - - 1e+1 At4g20030 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.29 39.2 0.96 Ta.3911.2.S1_s_at CA604151 - - 4e+0 At2g44290 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.3 99.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
10.9 99.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8 98.7 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9 98.4 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4 98.2 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0 98.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.6 97.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g28590, orthologous to the query gene, TaAffx.112158.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.29 30.3 At3g28590 822489 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.86 93.1 At2g10870 815550 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.80 89.8 At5g33390 833329 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BMOPFVA O.I. H.G. S.X.
0.55 70.6 At2g24920 817030 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.55 70.6 At3g30480 822761 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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