CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.111776.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At5g16650: DNAJ heat shock N-terminal domain-containing protein (HF=9e-1)

Module size 31 genes

NF 0.39

%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.79 91.3 0.93 TaAffx.111776.1.S1_x_at CA633994 - - 9e-1 At5g16650 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.55 76.8 0.96 TaAffx.113489.3.S1_at CA692052 - - 4e+0 At3g52561 unknown protein O.I. H.G. S.X.
0.55 76.8 0.96 Ta.7147.3.S1_a_at BJ315882 - - 5e-3 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.54 75.5 0.96 Ta.11338.1.S1_at BQ169872 - - 3e+0 At4g08593 unknown protein O.I. H.G. S.X.
0.53 74.9 0.94 TaAffx.27727.1.S1_at CA671744 - - 4e+0 At4g19350 EMB3006 (embryo defective 3006) O.I. H.G. S.X.
0.51 73.0 0.94 Ta.28719.1.A1_at CA722261 - - 1e+0 At5g61890 AP2 domain-containing transcription factor family protein O.I. H.G. S.X.
0.50 72.4 0.97 Ta.7147.3.S1_x_at BJ315882 - - 5e-3 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.49 69.7 0.96 Ta.3239.2.A1_a_at CA641606 - - 4e+0 At4g09775 - O.I. H.G. S.X.
0.49 69.7 0.96 Ta.5228.2.A1_a_at BJ283864 - - 2e+1 At5g38050 unknown protein O.I. H.G. S.X.
0.48 69.0 0.96 Ta.7147.2.S1_at CK161455 - - 9e-9 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.48 69.0 0.96 Ta.18508.1.S1_a_at CA652261 - - 4e-1 At4g37470 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.46 66.8 0.95 Ta.22534.1.S1_a_at CA644825 - - 6e-3 At1g50740 unknown protein O.I. H.G. S.X.
0.44 64.5 0.96 TaAffx.113489.1.S1_s_at CA653516 - - 5e-10 At3g12800 SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B) O.I. H.G. S.X.
0.41 59.6 0.95 TaAffx.19824.1.S1_at CK214059 - - 6e-20 At1g70160 unknown protein O.I. H.G. S.X.
0.41 59.6 0.96 Ta.6082.1.S1_x_at BQ752961 - - 5e-1 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.39 56.1 0.95 Ta.11730.1.S1_at CA736324 - - 1e+0 At1g75470 ATPUP15 O.I. H.G. S.X.
0.37 53.0 0.96 Ta.6082.1.S1_at BQ752961 - - 5e-1 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.37 53.0 0.95 TaAffx.129193.1.S1_s_at CK200585 - - 2e-9 At2g35680 dual specificity protein phosphatase family protein O.I. H.G. S.X.
0.37 53.0 0.96 Ta.6327.1.S1_at CA639936 - - 1e-2 At5g61530 small G protein family protein / RhoGAP family protein O.I. H.G. S.X.
0.36 51.9 0.95 TaAffx.53920.1.S1_at BQ901422 - - 1e-4 At3g49640 FAD binding / catalytic/ tRNA dihydrouridine synthase O.I. H.G. S.X.
0.35 49.8 0.96 Ta.3335.1.S1_at CD890295 - - 2e+0 At3g53520 UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1) O.I. H.G. S.X.
0.33 46.9 0.96 TaAffx.30725.1.S1_s_at CA622632 - - 1e+0 At1g03170 unknown protein O.I. H.G. S.X.
0.32 44.4 0.95 Ta.8336.2.S1_a_at CA679198 - - 4e+0 At5g06270 unknown protein O.I. H.G. S.X.
0.30 40.9 0.95 Ta.13481.1.S1_a_at BJ250262 - - 4e-3 At4g34660 SH3 domain-containing protein 2 (SH3P2) O.I. H.G. S.X.
0.29 39.2 0.94 TaAffx.19824.2.S1_s_at CA679087 - - 1e-9 At4g27020 unknown protein O.I. H.G. S.X.
0.28 39.2 0.95 Ta.13273.2.S1_a_at CA661231 - - 2e-11 At1g12760 protein binding / ubiquitin-protein ligase/ zinc ion binding O.I. H.G. S.X.
0.27 35.6 0.95 Ta.10202.1.S1_at CA644112 - - 8e+0 At5g66658 unknown protein O.I. H.G. S.X.
0.27 35.6 0.96 Ta.8525.3.S1_a_at CA743911 - - 7e-1 At3g50970 LTI30 (LOW TEMPERATURE-INDUCED 30) O.I. H.G. S.X.
0.25 32.1 0.95 Ta.29509.2.S1_x_at CA698053 - - 2e-5 At1g63960 unknown protein O.I. H.G. S.X.
0.22 27.1 0.95 Ta.4059.2.S1_s_at CA701531 - - 4e-2 At3g12360 ITN1 (INCREASED TOLERANCE TO NACL) O.I. H.G. S.X.
0.20 24.0 0.94 Ta.6673.1.A1_a_at BJ319533 - - 2e-9 At5g55530 C2 domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.79	91.3	0.93	TaAffx.111776.1.S1_x_at	CA633994	-	-	9e-1	At5g16650	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.55	76.8	0.96	TaAffx.113489.3.S1_at	CA692052	-	-	4e+0	At3g52561	unknown protein	O.I.	H.G.	S.X.
0.55	76.8	0.96	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.
0.54	75.5	0.96	Ta.11338.1.S1_at	BQ169872	-	-	3e+0	At4g08593	unknown protein	O.I.	H.G.	S.X.
0.53	74.9	0.94	TaAffx.27727.1.S1_at	CA671744	-	-	4e+0	At4g19350	EMB3006 (embryo defective 3006)	O.I.	H.G.	S.X.
0.51	73.0	0.94	Ta.28719.1.A1_at	CA722261	-	-	1e+0	At5g61890	AP2 domain-containing transcription factor family protein	O.I.	H.G.	S.X.
0.50	72.4	0.97	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.
0.49	69.7	0.96	Ta.3239.2.A1_a_at	CA641606	-	-	4e+0	At4g09775	-	O.I.	H.G.	S.X.
0.49	69.7	0.96	Ta.5228.2.A1_a_at	BJ283864	-	-	2e+1	At5g38050	unknown protein	O.I.	H.G.	S.X.
0.48	69.0	0.96	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.
0.48	69.0	0.96	Ta.18508.1.S1_a_at	CA652261	-	-	4e-1	At4g37470	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.46	66.8	0.95	Ta.22534.1.S1_a_at	CA644825	-	-	6e-3	At1g50740	unknown protein	O.I.	H.G.	S.X.
0.44	64.5	0.96	TaAffx.113489.1.S1_s_at	CA653516	-	-	5e-10	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.
0.41	59.6	0.95	TaAffx.19824.1.S1_at	CK214059	-	-	6e-20	At1g70160	unknown protein	O.I.	H.G.	S.X.
0.41	59.6	0.96	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.
0.39	56.1	0.95	Ta.11730.1.S1_at	CA736324	-	-	1e+0	At1g75470	ATPUP15	O.I.	H.G.	S.X.
0.37	53.0	0.96	Ta.6082.1.S1_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.
0.37	53.0	0.95	TaAffx.129193.1.S1_s_at	CK200585	-	-	2e-9	At2g35680	dual specificity protein phosphatase family protein	O.I.	H.G.	S.X.
0.37	53.0	0.96	Ta.6327.1.S1_at	CA639936	-	-	1e-2	At5g61530	small G protein family protein / RhoGAP family protein	O.I.	H.G.	S.X.
0.36	51.9	0.95	TaAffx.53920.1.S1_at	BQ901422	-	-	1e-4	At3g49640	FAD binding / catalytic/ tRNA dihydrouridine synthase	O.I.	H.G.	S.X.
0.35	49.8	0.96	Ta.3335.1.S1_at	CD890295	-	-	2e+0	At3g53520	UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1)	O.I.	H.G.	S.X.
0.33	46.9	0.96	TaAffx.30725.1.S1_s_at	CA622632	-	-	1e+0	At1g03170	unknown protein	O.I.	H.G.	S.X.
0.32	44.4	0.95	Ta.8336.2.S1_a_at	CA679198	-	-	4e+0	At5g06270	unknown protein	O.I.	H.G.	S.X.
0.30	40.9	0.95	Ta.13481.1.S1_a_at	BJ250262	-	-	4e-3	At4g34660	SH3 domain-containing protein 2 (SH3P2)	O.I.	H.G.	S.X.
0.29	39.2	0.94	TaAffx.19824.2.S1_s_at	CA679087	-	-	1e-9	At4g27020	unknown protein	O.I.	H.G.	S.X.
0.28	39.2	0.95	Ta.13273.2.S1_a_at	CA661231	-	-	2e-11	At1g12760	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	H.G.	S.X.
0.27	35.6	0.95	Ta.10202.1.S1_at	CA644112	-	-	8e+0	At5g66658	unknown protein	O.I.	H.G.	S.X.
0.27	35.6	0.96	Ta.8525.3.S1_a_at	CA743911	-	-	7e-1	At3g50970	LTI30 (LOW TEMPERATURE-INDUCED 30)	O.I.	H.G.	S.X.
0.25	32.1	0.95	Ta.29509.2.S1_x_at	CA698053	-	-	2e-5	At1g63960	unknown protein	O.I.	H.G.	S.X.
0.22	27.1	0.95	Ta.4059.2.S1_s_at	CA701531	-	-	4e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	O.I.	H.G.	S.X.
0.20	24.0	0.94	Ta.6673.1.A1_a_at	BJ319533	-	-	2e-9	At5g55530	C2 domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.4 99.3 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.0 98.5 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.2 97.5 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.0 97.4 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.1 96.4 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.0 96.3 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
11.4	99.3	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.0	98.5	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.2	97.5	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.0	97.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.0	96.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	TaAffx.111776.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g16650: DNAJ heat shock N-terminal domain-containing protein (HF=9e-1)
Module size	31 genes
NF	0.39
%ile	62.6

Co-expression analysis

Gene ID TaAffx.111776.1.S1_x_at Gene name Homology with ArabidopsisSimilar to At5g16650: DNAJ heat shock N-terminal domain-containing protein (HF=9e-1) Module size 31 genes NF 0.39 %ile 62.6

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID TaAffx.111776.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At5g16650: DNAJ heat shock N-terminal domain-containing protein (HF=9e-1)

Module size 31 genes

NF 0.39

%ile 62.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays