Co-expression analysis

Gene ID TaAffx.111658.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At1g72175: zinc finger (C3HC4-type RING finger) family protein (HF=2e+1)
Module size 17 genes
NF 0.43
%ile 68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7690.10.89TaAffx.111658.1.S1_s_atCA635858--2e+1At1g72175zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6182.00.91TaAffx.28146.1.S1_atCA664568--2e+1At3g12345unknown proteinO.I.H.G.S.X.
0.5979.80.91Ta.4913.2.A1_atCA744239--2e-6At5g06530ABC transporter family proteinO.I.H.G.S.X.
0.5879.20.89Ta.9131.2.S1_atCA738726--1e+0At1g10590DNA-binding protein-relatedO.I.H.G.S.X.
0.5678.60.92Ta.5287.1.S1_atCD879542--5e-3At2g07640D2,D4-dienoyl-CoA reductase-relatedO.I.H.G.S.X.
0.5273.70.91TaAffx.23406.1.S1_atCA735527--9e-4At3g53610ATRAB8O.I.H.G.S.X.
0.5173.00.91Ta.28933.2.S1_atCA726102--9e-26At4g14240-O.I.H.G.S.X.
0.4969.70.92Ta.28190.2.S1_a_atCA654134--7e-2At5g07620protein kinase family proteinO.I.H.G.S.X.
0.4058.40.93Ta.16985.2.S1_atCA746829--4e+0At4g16141sequence-specific DNA binding / transcription factor/ zinc ion bindingO.I.H.G.S.X.
0.3753.00.91Ta.5052.3.S1_atCA738890--3e-1At1g06240unknown proteinO.I.H.G.S.X.
0.3651.90.92TaAffx.8084.2.S1_atCA742580--3e-2At5g02480-O.I.H.G.S.X.
0.3651.90.92Ta.9024.3.S1_atCA664992--5e-12At2g20650zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3142.70.92Ta.30638.1.A1_s_atAJ577390.1hypothetical protein LOC543393-2e-7At5g20350TIP1 (TIP GROWTH DEFECTIVE 1)O.I.H.G.S.X.
0.3040.90.90TaAffx.53854.1.S1_atCA688433--1e+1At5g61997unknown proteinO.I.H.G.S.X.
0.2939.20.92TaAffx.15154.2.S1_s_atCA744371--9e-1At3g62030peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)O.I.H.G.S.X.
0.2024.00.93Ta.21490.1.S1_atBG907979--5e+0At5g50690AtHSD7 (hydroxysteroid dehydrogenase 7)O.I.H.G.S.X.
0.1922.40.92Ta.28142.2.S1_atCA644586--3e-1At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.399.8GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
15.799.6GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
8.698.9GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
7.798.7GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.697.8GSM324493Si+ B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
5.597.8GSM139932Anther mature anthers rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
5.497.7GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.297.5GSM139933Anther mature anthers rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
5.097.4GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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