Co-expression analysis

Gene ID	TaAffx.111311.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g61940: AtTLP4 (TUBBY LIKE PROTEIN 4) (HF=1e+0)
Module size	6 genes
NF	0.48
%ile	73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.95	TaAffx.111311.1.S1_at	CA643595	-	-	1e+0	At1g61940	AtTLP4 (TUBBY LIKE PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.96	TaAffx.65688.1.S1_x_at	BJ232502	-	-	2e+1	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.78822.1.S1_at	CA726823	-	-	1e+0	At5g01075	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	TaAffx.23743.1.S1_at	CA731059	-	-	3e-1	At2g28790	osmotin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.61664.1.S1_at	CA629036	-	-	2e-1	At1g59171	ATP binding / inositol pentakisphosphate 2-kinase	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.95	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.6	98.7	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
6.7	98.4	GSM138209	genotype H23 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.6	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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