Co-expression analysis

Gene ID	TaAffx.111241.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g28610: - (HF=5e-2)
Module size	10 genes
NF	0.39
%ile	63.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.41	59.6	0.67	TaAffx.111241.1.S1_at	CA645129	-	-	5e-2	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.81	TaAffx.58384.1.S1_at	CA620055	-	-	9e-3	At1g05900	endonuclease-related	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.87	TaAffx.1861.9.S1_x_at	CA697326	-	-	3e+0	At1g07040	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.83	TaAffx.29362.1.S1_at	CA644398	-	-	2e-1	At1g78150	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.78	TaAffx.29164.1.S1_at	CA649023	-	-	1e-2	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.83	TaAffx.120205.1.S1_at	BJ236765	-	-	4e+0	At3g62110	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.84	TaAffx.5820.1.S1_at	CA697811	-	-	1e+0	At5g49490	AGL83 (AGAMOUS-LIKE 83)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.77	TaAffx.86127.1.S1_at	CA616507	-	-	6e-1	At5g51370	F-box family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.88	TaAffx.111885.1.S1_at	CA631180	-	-	4e+0	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.86	TaAffx.6094.1.S1_at	CA691569	-	-	4e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.7	97.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250906	TcLr34_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250912	TcLr34_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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