Co-expression analysis

Gene ID TaAffx.110807.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g51730: RWD domain-containing protein (HF=3e-1)
Module size 6 genes
NF 0.29
%ile 46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6383.10.94TaAffx.110807.1.S1_atCA654006--3e-1At1g51730RWD domain-containing proteinO.I.H.G.S.X.
0.5072.40.96TaAffx.105223.1.S1_atCA737547--4e-1At3g13275unknown proteinO.I.H.G.S.X.
0.5072.40.96TaAffx.105223.1.S1_x_atCA737547--4e-1At3g13275unknown proteinO.I.H.G.S.X.
0.2125.50.97Ta.23348.3.A1_a_atCA675884--4e+0At1g60985SCRL6 (SCR-Like 6)O.I.H.G.S.X.
0.1517.10.97Ta.6777.2.A1_x_atCD885593--2e-20At5g51150unknown proteinO.I.H.G.S.X.
0.1213.30.97Ta.3659.1.S1_a_atCA670477--2e-14At4g15802-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.698.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
4.196.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.190.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.190.3GSM250894TcLr34_3dpi_inoculated_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os04g0616100, orthologous to the query gene, TaAffx.110807.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6382.7Os04g0616100At1g51730-TPR-like domain containing protein3e-2At3g01860unknown proteinO.I.H.G.S.X.
0.4355.4Os02g0174100At1g51730-SBP domain containing protein6e-3At5g50570squamosa promoter-binding protein, putativeO.I.H.G.S.X.
0.4051.1Os04g0464600At1g51730-Zn-finger, C2H2 type domain containing protein2e-1At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)O.I.H.G.S.X.
0.1510.3Os01g0939200At1g51730-Conserved hypothetical protein3e+0At4g16210ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)O.I.H.G.S.X.
0.149.3Os02g0565400At1g51730-TPR-like domain containing protein3e-1At1g09900pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.116.5Os04g0125900At1g51730-Conserved hypothetical protein6e-23At1g795002-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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