Co-expression analysis

Gene ID	TaAffx.110807.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g51730: RWD domain-containing protein (HF=3e-1)
Module size	6 genes
NF	0.29
%ile	46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.94	TaAffx.110807.1.S1_at	CA654006	-	-	3e-1	At1g51730	RWD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.105223.1.S1_at	CA737547	-	-	4e-1	At3g13275	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.105223.1.S1_x_at	CA737547	-	-	4e-1	At3g13275	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	Ta.23348.3.A1_a_at	CA675884	-	-	4e+0	At1g60985	SCRL6 (SCR-Like 6)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.97	Ta.6777.2.A1_x_at	CD885593	-	-	2e-20	At5g51150	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.97	Ta.3659.1.S1_a_at	CA670477	-	-	2e-14	At4g15802	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.1	96.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.1	90.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.1	90.3	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.12007.1.A1_at, orthologous to the query gene, TaAffx.110807.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	91.5	GmaAffx.12007.1.A1_at	At1g51730	-	-	4e-3	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.15146.1.S1_at	At1g51730	-	-	9e-7	At3g12570	FYD	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.5790.1.S1_a_at	At1g51730	-	-	9e-38	At5g23670	LCB2	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.14281.1.S1_at	At1g51730	-	-	2e-19	At5g38470	DNA repair protein RAD23, putative	O.I.	H.G.	S.X.	Please select
0.08	11.0	Gma.6975.1.S1_at	At1g51730	-	-	9e-13	At1g71980	protease-associated zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	Gma.2767.1.S1_at	At1g51730	-	-	8e-1	At1g44094	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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