CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.110807.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g51730: RWD domain-containing protein (HF=3e-1)

Module size 6 genes

NF 0.29

%ile 46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 83.1 0.94 TaAffx.110807.1.S1_at CA654006 - - 3e-1 At1g51730 RWD domain-containing protein O.I. H.G. S.X.
0.50 72.4 0.96 TaAffx.105223.1.S1_at CA737547 - - 4e-1 At3g13275 unknown protein O.I. H.G. S.X.
0.50 72.4 0.96 TaAffx.105223.1.S1_x_at CA737547 - - 4e-1 At3g13275 unknown protein O.I. H.G. S.X.
0.21 25.5 0.97 Ta.23348.3.A1_a_at CA675884 - - 4e+0 At1g60985 SCRL6 (SCR-Like 6) O.I. H.G. S.X.
0.15 17.1 0.97 Ta.6777.2.A1_x_at CD885593 - - 2e-20 At5g51150 unknown protein O.I. H.G. S.X.
0.12 13.3 0.97 Ta.3659.1.S1_a_at CA670477 - - 2e-14 At4g15802 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.6 98.3 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.7 97.1 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3 96.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
4.1 96.4 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1 94.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.1 90.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
2.1 90.3 GSM250894 TcLr34_3dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g51730, orthologous to the query gene, TaAffx.110807.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.91 95.6 At1g51730 841598 RWD domain-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. H.G. S.X.
0.57 73.8 At3g17590 821025 BSH (BUSHY GROWTH) Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes. O.I. H.G. S.X.
0.46 59.8 At5g44320 834457 eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative F:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOFP O.I. H.G. S.X.
0.44 57.2 At5g25780 832647 EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) member of eIF3b - eukaryotic initiation factor 3b O.I. H.G. S.X.
0.31 33.8 At1g63780 842682 IMP4 Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies. O.I. H.G. S.X.
0.18 11.4 At4g02230 828099 60S ribosomal protein L19 (RPL19C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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