Co-expression analysis

Gene ID	TaAffx.110693.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g61255: - (HF=7e-2)
Module size	34 genes
NF	0.37
%ile	59.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	0.84	TaAffx.110693.2.S1_at	CA655890	-	-	7e-2	At1g61255	-	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.91	TaAffx.6303.1.S1_x_at	CA688541	-	-	6e-5	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.91	Ta.25602.2.S1_x_at	CA694393	-	-	1e+0	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.92	Ta.8765.1.A1_x_at	BQ162344	-	-	3e+0	At3g03405	-	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.90	TaAffx.55725.1.S1_at	CA662141	-	-	4e+0	At3g11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.94	Ta.15206.1.S1_at	CA693469	-	-	3e-1	At2g22320	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.92	TaAffx.52614.1.S1_at	CA704641	-	-	1e+1	At3g58450	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.94	TaAffx.105889.1.S1_s_at	CA728431	-	-	1e+0	At3g61260	DNA-binding family protein / remorin family protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.94	Ta.8195.2.S1_at	CD875760	-	-	2e-6	At1g68010	HPR	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.93	Ta.10327.2.S1_a_at	CA723265	-	-	3e+0	At2g04550	IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.94	TaAffx.113756.1.S1_at	CA605644	-	-	1e-3	At5g04250	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.93	Ta.9958.1.S1_at	BJ240805	-	-	2e+0	At3g46570	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	Ta.13051.1.S1_at	CA486369	-	-	9e-2	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.92	TaAffx.32077.1.S1_at	CA601409	-	-	1e-12	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	TaAffx.36684.1.A1_at	BJ319782	-	-	2e-1	At5g14690	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.92	TaAffx.95094.1.S1_at	CA597622	-	-	4e+0	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.93	TaAffx.81077.1.S1_s_at	CA732020	-	-	5e-3	At3g20900	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	Ta.23299.2.S1_at	CA681592	-	-	9e-1	At5g06380	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.93	TaAffx.54617.1.S1_at	CA679267	-	-	2e+1	At5g45573	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.93	TaAffx.5547.1.S1_at	CA707355	-	-	4e+0	At5g50740	metal ion binding	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.91	TaAffx.32054.1.S1_at	CA602109	-	-	2e+1	At5g20650	COPT5	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.93	Ta.8368.2.S1_at	CA624505	-	-	2e-4	At5g61640	PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.88	Ta.21315.1.S1_at	CA654743	-	-	2e-2	At3g17410	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.51452.1.S1_at	CA724758	-	-	1e+1	At5g56369	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.91	TaAffx.111679.2.S1_x_at	CA636873	-	-	1e-9	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.91	TaAffx.79004.1.S1_at	CA657702	-	-	1e+0	At2g06530	VPS2.1	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	TaAffx.107754.1.S1_at	CD876350	-	-	1e+0	At2g21780	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.92	TaAffx.80668.1.S1_at	CA694164	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	Ta.12962.1.S1_at	CA484677	-	-	7e-3	At2g02930	ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.93	Ta.17164.1.S1_at	CA618416	-	-	1e+0	At3g55820	-	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.93	Ta.25522.2.S1_x_at	CA683586	-	-	2e-1	At4g13560	UNE15 (unfertilized embryo sac 15)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.92	Ta.10240.2.S1_at	CA657539	-	-	4e-15	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.93	TaAffx.99338.1.S1_at	CA614015	-	-	2e-4	At2g31800	ankyrin protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.90	TaAffx.105586.1.S1_at	BJ317378	-	-	3e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	99.5	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
7.0	98.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.8	98.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.7	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.0	98.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage