Co-expression analysis

Gene ID	TaAffx.110614.4.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g14630: GLP9 (GERMIN-LIKE PROTEIN 9) (HF=3e-1)
Module size	6 genes
NF	0.61
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.94	TaAffx.110614.4.S1_at	CA605907	-	-	3e-1	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.95	TaAffx.105943.1.S1_at	CA727514	-	-	2e+1	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.95	Ta.19591.2.A1_a_at	CA651113	-	-	4e+0	At5g11500	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.94	TaAffx.51913.1.S1_x_at	CA716536	-	-	8e-1	At5g56110	ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.94	Ta.16453.1.S1_at	CA606648	-	-	1e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.94	TaAffx.105981.1.S1_at	CA727065	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.7	99.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
19.1	99.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
16.5	99.6	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
11.0	99.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
8.2	98.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
5.5	97.8	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the grape gene, 1609265_at, orthologous to the query gene, TaAffx.110614.4.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1609265_at	At4g14630	hypothetical protein LOC100255460	-	5e-2	At3g60530	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	1622399_at	At4g14630	similar to DNA-binding protein	-	2e-27	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.83	94.6	1609171_at	At4g14630	hypothetical protein LOC100251782	-	2e-2	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1610064_at	At4g14630	similar to DNA-binding protein	-	3e-19	At2g38470	WRKY33	O.I.	H.G.	S.X.	Please select
0.67	87.9	1611285_s_at	At4g14630	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.55	77.3	1619985_at	At4g14630	hypothetical protein LOC100262198	-	3e-1	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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