CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.110614.4.S1_at

Gene name
Homology with Arabidopsis Similar to At4g14630: GLP9 (GERMIN-LIKE PROTEIN 9) (HF=3e-1)

Module size 6 genes

NF 0.61

%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.94 TaAffx.110614.4.S1_at CA605907 - - 3e-1 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.60 81.0 0.95 TaAffx.105943.1.S1_at CA727514 - - 2e+1 At5g07470 PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) O.I. H.G. S.X.
0.57 79.2 0.95 Ta.19591.2.A1_a_at CA651113 - - 4e+0 At5g11500 unknown protein O.I. H.G. S.X.
0.53 74.9 0.94 TaAffx.51913.1.S1_x_at CA716536 - - 8e-1 At5g56110 ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103) O.I. H.G. S.X.
0.53 74.9 0.94 Ta.16453.1.S1_at CA606648 - - 1e+0 At4g29650 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase O.I. H.G. S.X.
0.42 60.9 0.94 TaAffx.105981.1.S1_at CA727065 - - 3e-1 At4g11870 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.7 99.8 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
19.1 99.7 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
16.5 99.6 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
11.0 99.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
8.2 98.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.7 97.9 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
5.5 97.8 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
5.2 97.5 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1 97.5 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
4.6 97.0 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the rice gene, Os03g0693700, orthologous to the query gene, TaAffx.110614.4.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os03g0693700 At4g14630 - Oxalate oxidase 1 (EC 1.2.3.4) (Germin) 8e+0 At3g10080 germin-like protein, putative O.I. H.G. S.X.
0.83 95.8 Os12g0151000 At4g14630 - Purple acid phosphatase 2e-1 At3g46120 PAP19 (PURPLE ACID PHOSPHATASE 19) O.I. H.G. S.X.
0.80 94.6 Os05g0247800 At4g14630 - Glycoside hydrolase, family 18 protein 2e+0 At1g64628 CPuORF57 (Conserved peptide upstream open reading frame 57) O.I. H.G. S.X.
0.73 91.1 Os06g0110200 At4g14630 - Late embryogenesis abundant (LEA) group 1 familyprotein 1e+0 At4g11250 AGL52 O.I. H.G. S.X.
0.73 91.1 Os08g0104400 At4g14630 - Conserved hypothetical protein 2e-2 At3g12960 unknown protein O.I. H.G. S.X.
0.50 68.0 Os07g0213600 At4g14630 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 3e-1 At5g61660 glycine-rich protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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