Co-expression analysis

Gene ID TaAffx.110614.4.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g14630: GLP9 (GERMIN-LIKE PROTEIN 9) (HF=3e-1)
Module size 6 genes
NF 0.61
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.94TaAffx.110614.4.S1_atCA605907--3e-1At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.6081.00.95TaAffx.105943.1.S1_atCA727514--2e+1At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)O.I.H.G.S.X.
0.5779.20.95Ta.19591.2.A1_a_atCA651113--4e+0At5g11500unknown proteinO.I.H.G.S.X.
0.5374.90.94TaAffx.51913.1.S1_x_atCA716536--8e-1At5g56110ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)O.I.H.G.S.X.
0.5374.90.94Ta.16453.1.S1_atCA606648--1e+0At4g29650cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseO.I.H.G.S.X.
0.4260.90.94TaAffx.105981.1.S1_atCA727065--3e-1At4g11870unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.799.8GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
19.199.7GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
16.599.6GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
11.099.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.298.8GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.797.9GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.597.8GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.297.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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