Co-expression analysis

Gene ID	TaAffx.110415.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g19151: unknown protein (HF=1e+0)
Module size	25 genes
NF	0.31
%ile	50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.4	0.80	TaAffx.110415.2.S1_at	CA659186	-	-	1e+0	At5g19151	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.89	TaAffx.122623.3.S1_at	CA616407	-	-	3e-1	At1g22600	-	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.86	TaAffx.50194.1.S1_at	CA744677	-	-	1e+1	At5g19151	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.89	TaAffx.109595.2.S1_at	CA678391	-	-	3e+0	At1g79870	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.91	Ta.29487.2.S1_x_at	CA623842	-	-	4e+0	At5g10880	tRNA synthetase-related / tRNA ligase-related	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.91	Ta.17238.1.S1_at	CA618281	-	-	3e-10	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.92	TaAffx.38529.1.A1_at	BJ220916	-	-	7e-1	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.93	TaAffx.110665.1.S1_at	CA656430	-	-	4e+0	At2g33250	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.92	Ta.18218.1.S1_at	CA631691	-	-	8e+0	At5g13070	MSF1-like family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.91	TaAffx.112465.2.S1_at	CA623711	-	-	3e-13	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.90	Ta.17285.1.S1_at	CA619345	-	-	4e+0	At5g55680	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.93	TaAffx.112440.1.S1_at	CA621396	-	-	4e-1	At3g11050	ATFER2 (ferritin 2)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.93	Ta.19361.2.S1_at	CA650802	-	-	5e-15	At4g12650	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.92	TaAffx.65627.1.S1_at	BJ235571	-	-	5e+0	At3g51380	IQD20 (IQ-domain 20)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.93	TaAffx.105981.1.S1_at	CA727065	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.92	TaAffx.13750.2.A1_at	CA647055	-	-	4e+0	At5g51545	LPA2 (low psii accumulation2)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	Ta.28579.2.S1_at	CA611367	-	-	4e+0	At5g67580	TRB2	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.92	TaAffx.12644.1.S1_at	BJ247681	-	-	4e-1	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.93	TaAffx.51911.1.S1_at	CA716547	-	-	3e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.90	Ta.3590.3.S1_at	CA676407	-	-	2e-2	At2g33450	50S ribosomal protein L28, chloroplast (CL28)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.91	Ta.16451.1.S1_at	CA606611	-	-	9e-1	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.91	Ta.17287.1.S1_at	CA619357	-	-	4e-3	At4g24920	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.93	TaAffx.78428.1.S1_at	CA732797	-	-	1e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.90	TaAffx.39132.1.S1_at	BQ609523	-	-	4e+0	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.91	Ta.17873.1.S1_at	CA625230	-	-	2e+0	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.2	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.1	97.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage