CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.110147.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g37409: unknown protein (HF=1e+1)

Module size 6 genes

NF 0.58

%ile 83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.89 TaAffx.110147.1.S1_at BG905569 - - 1e+1 At4g37409 unknown protein O.I. H.G. S.X.
0.55 76.8 0.89 Ta.5437.1.S1_at CK204523 - - 4e-5 At5g23750 remorin family protein O.I. H.G. S.X.
0.55 76.8 0.91 Ta.21345.1.A1_x_at CA718360 - - 2e+1 At5g26330 plastocyanin-like domain-containing protein / mavicyanin, putative O.I. H.G. S.X.
0.50 72.4 0.92 Ta.21345.1.A1_at CA718360 - - 2e+1 At5g26330 plastocyanin-like domain-containing protein / mavicyanin, putative O.I. H.G. S.X.
0.40 58.4 0.90 Ta.8988.1.S1_at BQ162735 - - 4e+0 At5g41810 unknown protein O.I. H.G. S.X.
0.38 54.7 0.88 Ta.303.1.S1_x_at BG906281 - - 3e+0 At3g28590 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.6 99.3 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
11.0 99.3 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.2 99.2 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
9.7 99.1 GSM298082 Leaf tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
9.6 99.1 GSM298081 Leaf tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
9.5 99.1 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.5 98.9 GSM298057 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.1 98.8 GSM250894 TcLr34_3dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3 98.6 GSM298058 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.4 98.2 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the rice gene, Os07g0501100, orthologous to the query gene, TaAffx.110147.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os07g0501100 At4g37409 - Chalcone synthase (EC 2.3.1.74)(Naregenin-chalcone synthase) 2e-1 At2g14247 Expressed protein O.I. H.G. S.X.
0.04 2.0 Os02g0546500 At4g37409 - Conserved hypothetical protein 2e+0 At2g35640 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.01 0.5 Os01g0928700 At4g37409 - Aminotransferase, class I and II domain containingprotein 4e-18 At5g23670 LCB2 O.I. H.G. S.X.
0.01 0.5 Os12g0489800 At4g37409 - NBS-LRR protein (Fragment) 2e+0 At5g63225 - O.I. H.G. S.X.
0.00 0.1 Os03g0199200 At4g37409 - - 1e+1 At4g08455 BTB/POZ domain-containing protein O.I. H.G. S.X.
0.00 0.1 Os04g0456200 At4g37409 - TMV induced protein 1-2 5e+0 At5g17060 ATARFB1B O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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