Co-expression analysis

Gene ID	TaAffx.110147.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g37409: unknown protein (HF=1e+1)
Module size	6 genes
NF	0.58
%ile	83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.89	TaAffx.110147.1.S1_at	BG905569	-	-	1e+1	At4g37409	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.89	Ta.5437.1.S1_at	CK204523	-	-	4e-5	At5g23750	remorin family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.91	Ta.21345.1.A1_x_at	CA718360	-	-	2e+1	At5g26330	plastocyanin-like domain-containing protein / mavicyanin, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.92	Ta.21345.1.A1_at	CA718360	-	-	2e+1	At5g26330	plastocyanin-like domain-containing protein / mavicyanin, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.90	Ta.8988.1.S1_at	BQ162735	-	-	4e+0	At5g41810	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.88	Ta.303.1.S1_x_at	BG906281	-	-	3e+0	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	99.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
11.0	99.3	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.2	99.2	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.7	99.1	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.6	99.1	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.5	99.1	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.5	98.9	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.1	98.8	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the barley gene, Contig12563_s_at, orthologous to the query gene, TaAffx.110147.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.8	Contig12563_s_at	At4g37409	-	-	1e+0	At3g25716	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig15422_at	At4g37409	-	-	2e-1	At3g10585	myb family transcription factor / I-box binding factor-related protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig16518_at	At4g37409	-	-	7e+0	Atmg00070	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	EBro03_SQ008_H22_at	At4g37409	-	-	4e-6	At4g32605	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig16032_at	At4g37409	-	-	9e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig7166_s_at	At4g37409	CesA3 protein	-	1e-16	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig6509_at	At4g37409	-	-	4e-21	At5g12040	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig10799_at	At4g37409	-	-	4e-14	At5g38900	DSBA oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig19776_at	At4g37409	-	-	1e+0	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig17683_at	At4g37409	-	-	2e+0	At3g11730	ATFP8	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig642_at	At4g37409	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig15382_at	At4g37409	-	-	7e+0	Atmg00550	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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