Co-expression analysis

Gene ID	TaAffx.110147.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g37409: unknown protein (HF=1e+1)
Module size	6 genes
NF	0.58
%ile	83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.89	TaAffx.110147.1.S1_at	BG905569	-	-	1e+1	At4g37409	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.89	Ta.5437.1.S1_at	CK204523	-	-	4e-5	At5g23750	remorin family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.91	Ta.21345.1.A1_x_at	CA718360	-	-	2e+1	At5g26330	plastocyanin-like domain-containing protein / mavicyanin, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.92	Ta.21345.1.A1_at	CA718360	-	-	2e+1	At5g26330	plastocyanin-like domain-containing protein / mavicyanin, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.90	Ta.8988.1.S1_at	BQ162735	-	-	4e+0	At5g41810	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.88	Ta.303.1.S1_x_at	BG906281	-	-	3e+0	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	99.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
11.0	99.3	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.2	99.2	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.7	99.1	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.6	99.1	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.5	99.1	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.5	98.9	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.1	98.8	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.12286.2.S1_at, orthologous to the query gene, TaAffx.110147.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.12286.2.S1_at	At4g37409	-	-	1e-11	At5g38510	rhomboid family protein	O.I.	H.G.	S.X.	Please select
0.77	90.3	GmaAffx.68071.1.S1_at	At4g37409	-	-	1e-1	At1g09530	PIF3 (PHYTOCHROME INTERACTING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.60	80.7	GmaAffx.18273.1.A1_at	At4g37409	-	-	1e+0	At1g64490	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.67157.1.S1_at	At4g37409	-	-	3e-16	At2g30950	VAR2 (VARIEGATED 2)	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.12286.1.S1_at	At4g37409	-	-	1e+0	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.13184.1.A1_at	At4g37409	-	-	2e-33	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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