Co-expression analysis

Gene ID	TaAffx.110019.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g54900: CXIP1 (CAX INTERACTING PROTEIN 1) (HF=4e+0)
Module size	36 genes
NF	0.43
%ile	68.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	0.92	TaAffx.110019.1.S1_at	CA665372	-	-	4e+0	At3g54900	CXIP1 (CAX INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.94	TaAffx.49612.2.A1_at	CA498714	-	-	5e-1	At1g06980	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.95	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.93	TaAffx.112304.2.S1_at	CA619303	-	-	3e-1	At2g16850	PIP2	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.94	TaAffx.4913.1.S1_at	CA728728	-	-	2e+1	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.93	TaAffx.30797.2.S1_at	CA623819	-	-	1e-3	At5g24610	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.93	TaAffx.78717.1.S1_at	CA728365	-	-	3e+0	At2g24570	WRKY17	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.94	Ta.5807.2.S1_at	BJ290044	-	-	3e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	TaAffx.58638.1.S1_at	CA617698	-	-	4e+0	At1g12805	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.94	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.93	TaAffx.55766.1.S1_at	CA661605	-	-	1e+0	At5g03040	iqd2 (IQ-domain 2)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.94	TaAffx.29732.1.S1_at	CA636473	-	-	7e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.94	TaAffx.30598.1.S1_at	CA623743	-	-	1e+0	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	TaAffx.30673.1.S1_at	CA623010	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	TaAffx.55935.1.S1_at	CA659286	-	-	3e+0	At5g39640	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	TaAffx.78861.1.S1_at	CA725589	-	-	1e+1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.94	TaAffx.114767.1.S1_at	CA723425	-	-	3e-3	At4g17600	LIL3:1	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	TaAffx.57555.1.S1_at	CA618738	-	-	2e+1	At5g67600	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	TaAffx.115939.2.S1_at	CA677586	-	-	7e-2	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.94	TaAffx.64591.1.S1_at	BJ288225	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.93	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	TaAffx.38625.1.S1_at	BJ224452	-	-	6e-2	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	TaAffx.112158.1.S1_x_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	TaAffx.25411.1.S1_at	CA700489	-	-	4e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.109025.3.S1_at	CA702122	-	-	2e-1	At1g08790	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.94	TaAffx.5596.1.S1_at	CA705635	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	TaAffx.34241.2.S1_at	CA722326	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	Ta.9084.3.S1_at	CA666296	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	TaAffx.114049.1.S1_at	CA599641	-	-	5e+0	At4g33560	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.16699.2.S1_x_at	CA682179	-	-	4e+0	At5g36130	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	TaAffx.35493.1.S1_at	BQ606743	-	-	4e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.94	TaAffx.31313.1.S1_at	CA617546	-	-	1e+1	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.34241.2.S1_x_at	CA722326	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.4	96.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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