Co-expression analysis

Gene ID	TaAffx.109854.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g29850: unknown protein (HF=4e+0)
Module size	6 genes
NF	0.85
%ile	98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.85	TaAffx.109854.1.S1_at	CA667998	-	-	4e+0	At4g29850	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.87	TaAffx.7028.1.S1_at	CA670566	-	-	9e-1	At5g46660	CHP-rich zinc finger protein, putative	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.84	TaAffx.53115.1.S1_at	CA696524	-	-	3e-1	At2g45630	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.83	Ta.15129.1.S1_at	CA690804	-	-	5e+0	At4g13590	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.83	TaAffx.52968.1.S1_at	CA698278	-	-	1e+0	At3g57440	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.85	TaAffx.7177.1.S1_x_at	CA694274	-	-	5e-4	At3g47000	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
37.5	99.9	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
21.9	99.8	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
13.2	99.5	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.7	99.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.8	98.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6	98.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.8	98.7	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.7	98.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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