Co-expression analysis

Gene ID	TaAffx.109765.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g17100: transcription factor (HF=4e-3)
Module size	6 genes
NF	0.09
%ile	20.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.85	TaAffx.109765.2.S1_at	CA669372	-	-	4e-3	At3g17100	transcription factor	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.92	TaAffx.55497.1.S1_at	CA665286	-	-	3e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.92	TaAffx.28512.1.S1_at	CA659249	-	-	2e-1	At3g27590	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.92	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.92	Ta.7295.3.S1_x_at	CA611407	-	-	4e-3	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.93	TaAffx.57555.1.S1_at	CA618738	-	-	2e+1	At5g67600	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	99.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.7	98.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM250889	Tc_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM138179	genotype A88 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5	95.4	GSM250916	TcLr1_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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