CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.109255.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g64810: WRKY51 (HF=1e+1)

Module size 6 genes

NF 0.04

%ile 12.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.73 TaAffx.109255.1.S1_at CA677969 - - 1e+1 At5g64810 WRKY51 O.I. H.G. S.X.
0.22 27.1 0.94 Ta.28728.3.S1_at BJ284035 Plasma membrane intrinsic protein - 3e-31 At2g37180 RD28 (RESPONSIVE TO DESICCATION 28) O.I. H.G. S.X.
0.19 22.4 0.94 Ta.28728.3.S1_x_at BJ284035 Plasma membrane intrinsic protein - 3e-31 At2g37180 RD28 (RESPONSIVE TO DESICCATION 28) O.I. H.G. S.X.
0.03 4.7 0.94 Ta.8457.2.A1_at BQ161925 - - 1e+1 At4g00220 JLO (JAGGED LATERAL ORGANS) O.I. H.G. S.X.
0.02 3.6 0.93 TaAffx.122452.1.A1_at BE515764 - - 4e+0 At1g68880 AtbZIP (Arabidopsis thaliana basic leucine-zipper 8) O.I. H.G. S.X.
0.02 3.6 0.83 TaAffx.105253.1.S1_at CA737190 - - 4e+0 At4g10430 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.3 99.2 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.7 98.9 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4 98.6 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2 98.1 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5 96.9 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5 96.9 GSM250910 TcLr1_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM250886 TcLr1_3dpi_inoculated_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM250890 Tc_3dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1 96.4 GSM250901 Tc_7dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.68944.1.A1_at, orthologous to the query gene, TaAffx.109255.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 73.7 PtpAffx.68944.1.A1_at At5g64810 - - 1e+1 At5g64400 - O.I. H.G. S.X.
0.40 67.0 PtpAffx.77901.1.A1_at At5g64810 - - 6e-2 At4g37230 oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative O.I. H.G. S.X.
0.40 67.0 PtpAffx.29152.1.A1_at At5g64810 - - 4e+0 At5g17620 - O.I. H.G. S.X.
0.40 67.0 PtpAffx.216869.1.S1_at At5g64810 hypothetical protein - 1e+1 At2g33830 dormancy/auxin associated family protein O.I. H.G. S.X.
0.31 53.7 PtpAffx.217068.1.S1_at At5g64810 hypothetical protein - 3e-1 At3g19950 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.27 47.1 PtpAffx.221219.1.S1_at At5g64810 hypothetical protein - 3e-1 At1g15680 F-box family protein O.I. H.G. S.X.
0.13 21.6 Ptp.7079.1.S1_at At5g64810 - - 4e+0 At1g57730 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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