Co-expression analysis

Gene ID	TaAffx.109255.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g64810: WRKY51 (HF=1e+1)
Module size	6 genes
NF	0.04
%ile	12.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.73	TaAffx.109255.1.S1_at	CA677969	-	-	1e+1	At5g64810	WRKY51	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.94	Ta.28728.3.S1_at	BJ284035	Plasma membrane intrinsic protein	-	3e-31	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.94	Ta.28728.3.S1_x_at	BJ284035	Plasma membrane intrinsic protein	-	3e-31	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.94	Ta.8457.2.A1_at	BQ161925	-	-	1e+1	At4g00220	JLO (JAGGED LATERAL ORGANS)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.93	TaAffx.122452.1.A1_at	BE515764	-	-	4e+0	At1g68880	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.83	TaAffx.105253.1.S1_at	CA737190	-	-	4e+0	At4g10430	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.7	98.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250910	TcLr1_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250886	TcLr1_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250890	Tc_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250901	Tc_7dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, HV14M05r_at, orthologous to the query gene, TaAffx.109255.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.4	HV14M05r_at	At5g64810	-	-	9e-2	At5g38490	DNA binding	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig18499_at	At5g64810	-	-	1e+0	At5g28750	thylakoid assembly protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	HA08g16r_at	At5g64810	-	-	8e-1	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.65	81.4	Contig23664_at	At5g64810	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	HVSMEg0002G01r2_x_at	At5g64810	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig25667_x_at	At5g64810	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	EBro08_SQ001_H04_at	At5g64810	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	V00087.1_at	At5g64810	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.58	74.9	Contig18739_at	At5g64810	-	-	4e+0	At2g32960	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig2379_s_at	At5g64810	-	-	2e-8	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	HVSMEm0022H22r2_at	At5g64810	-	-	6e-1	At2g33590	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig12986_at	At5g64810	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	HVSMEa0012H02f2_at	At5g64810	-	-	4e+0	At3g02555	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	HD03N13u_at	At5g64810	-	-	2e+1	At5g42591	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	HS05N06r_at	At5g64810	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	EBro02_SQ008_P15_at	At5g64810	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig14886_at	At5g64810	-	-	1e+0	At3g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	9507414_R_4264-4644_at	At5g64810	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig26035_at	At5g64810	-	-	2e+0	At1g10600	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	EBem04_SQ003_H15_at	At5g64810	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	HY06F24u_x_at	At5g64810	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	EBro08_SQ007_C12_at	At5g64810	-	-	9e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.46	61.0	HV_CEa0014H05r2_at	At5g64810	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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