Co-expression analysis

Gene ID TaAffx.109175.2.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At4g29020: glycine-rich protein (HF=1e+0)
Module size 6 genes
NF 0.60
%ile 85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.96TaAffx.109175.2.S1_x_atCA679138--1e+0At4g29020glycine-rich proteinO.I.H.G.S.X.
0.6182.00.96Ta.18019.2.S1_atCA625748--1e+0At1g32700zinc-binding family proteinO.I.H.G.S.X.
0.5576.80.96TaAffx.85941.1.S1_atCA618291--2e+1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4666.80.96Ta.6759.2.S1_atBJ211299--2e+0At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.
0.4464.50.96Ta.21581.1.S1_atCA696527--4e+0At2g36460fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.4058.40.96TaAffx.5596.1.S1_atCA705635--3e+0At1g12250thylakoid lumenal protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.599.7GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
12.399.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
9.899.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
9.099.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.098.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.598.3GSM298091Leaf tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.998.0GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM298079Leaf tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.497.7GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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