Co-expression analysis

Gene ID	TaAffx.109155.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g63055: unknown protein (HF=6e-1)
Module size	6 genes
NF	0.01
%ile	4.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.86	TaAffx.109155.1.S1_at	CA679363	-	-	6e-1	At1g63055	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.93	TaAffx.55475.1.S1_at	CA665552	-	-	8e-1	At2g46870	NGA1 (NGATHA1)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.94	Ta.1238.3.S1_a_at	CA728496	-	-	3e-1	At1g25472	CPuORF54 (Conserved peptide upstream open reading frame 54)	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.93	TaAffx.64474.2.S1_at	BJ289837	-	-	3e-1	At3g07490	AGD11 (ARF-GAP domain 11)	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.93	Ta.3530.3.S1_x_at	BJ223674	-	-	7e-2	At1g19130	-	O.I.	H.G.	S.X.	Please select
-	0.7	0.93	Ta.23895.1.S1_at	CK205337	-	-	3e-55	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.5	99.7	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
18.7	99.7	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
18.0	99.7	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
2.8	93.6	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5	92.5	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.4	92.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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