Co-expression analysis

Gene ID	TaAffx.109027.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g35660: unknown protein (HF=9e+0)
Module size	18 genes
NF	0.31
%ile	50.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.2	0.86	TaAffx.109027.1.S1_x_at	CA681071	-	-	9e+0	At4g35660	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.89	Ta.9903.2.A1_at	CA655713	-	-	4e+0	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.92	TaAffx.85825.1.S1_at	CA619282	-	-	4e+0	At2g28305	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.92	TaAffx.84078.1.S1_at	CA662819	-	-	6e+0	At4g30074	LCR19 (Low-molecular-weight cysteine-rich 19)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.90	TaAffx.112041.1.S1_at	CA627614	-	-	6e-1	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.91	TaAffx.57127.1.S1_at	CA636127	-	-	2e-2	At5g12470	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.89	TaAffx.78088.1.S1_at	CA737721	-	-	2e-1	At1g11820	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.90	Ta.28938.2.S1_at	CA684040	-	-	3e+0	At4g01310	ribosomal protein L5 family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.90	Ta.9136.2.S1_at	CA747260	-	-	3e-2	At5g36240	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.91	Ta.30375.2.S1_at	CA649063	-	-	4e+0	At3g12510	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.89	Ta.3076.3.S1_at	CA670610	-	-	3e+0	At3g45851	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.90	TaAffx.105190.1.S1_at	CA738918	-	-	1e+0	At4g37685	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.90	Ta.28656.1.S1_at	CA667978	-	-	2e+1	At5g23260	TT16 (TRANSPARENT TESTA16)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.92	Ta.28875.3.A1_at	CA630498	-	-	2e-5	At4g27700	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.89	TaAffx.24301.1.S1_at	CA721320	-	-	7e-2	At2g01360	-	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.90	Ta.7014.3.S1_at	BJ313913	-	-	1e+0	At3g29350	AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.89	TaAffx.25530.1.S1_at	CA698812	-	-	3e-1	At1g17520	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.90	TaAffx.86676.1.S1_s_at	CA603044	-	-	8e-1	At1g15900	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.7	97.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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